Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3056

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,517,926	+		Rru_A3055	0.15	+0.2
3,517,927	-		Rru_A3055	0.15	+0.7
3,517,927	-		Rru_A3055	0.15	+0.0
3,517,984	+		Rru_A3055	0.21	+0.9
3,517,984	+		Rru_A3055	0.21	-1.0
3,517,985	-		Rru_A3055	0.21	+1.5
3,517,985	-		Rru_A3055	0.21	+1.3
3,517,986	+		Rru_A3055	0.21	+0.0
3,517,986	+		Rru_A3055	0.21	+1.3
3,517,986	+		Rru_A3055	0.21	+1.3
3,517,986	+		Rru_A3055	0.21	+0.0
3,517,986	+		Rru_A3055	0.21	+1.4
3,517,986	+		Rru_A3055	0.21	+0.0
3,517,986	+		Rru_A3055	0.21	+1.0
3,517,986	+		Rru_A3055	0.21	+0.0
3,517,986	+		Rru_A3055	0.21	+1.0
3,517,986	+		Rru_A3055	0.21	+1.4
3,517,986	+		Rru_A3055	0.21	+0.0
3,517,987	-		Rru_A3055	0.21	+1.4
3,518,157	+		Rru_A3055	0.40	+1.3
3,518,196	+		Rru_A3055	0.44	+0.0
3,518,196	+		Rru_A3055	0.44	-1.0
3,518,368	-		Rru_A3055	0.63	+0.1
3,518,475	+		Rru_A3055	0.75	+0.0
3,518,475	+		Rru_A3055	0.75	+1.8
3,518,475	+		Rru_A3055	0.75	+0.7
3,518,475	+		Rru_A3055	0.75	+0.0
3,518,475	+		Rru_A3055	0.75	+0.0
3,518,476	-		Rru_A3055	0.75	+0.0
3,518,476	-		Rru_A3055	0.75	+0.4
3,518,545	-		Rru_A3055	0.83	+0.0
3,518,545	-		Rru_A3055	0.83	+1.1
3,518,545	-		Rru_A3055	0.83	+0.1
3,518,545	-		Rru_A3055	0.83	+0.0
3,518,565	+		Rru_A3055	0.85	+0.0
3,518,565	+		Rru_A3055	0.85	+1.3
3,518,565	+		Rru_A3055	0.85	+0.0
3,518,566	-		Rru_A3055	0.85	+0.0
3,518,566	-		Rru_A3055	0.85	+1.0
3,518,566	-		Rru_A3055	0.85	+1.4
3,518,566	-		Rru_A3055	0.85	+0.9
3,518,566	-		Rru_A3055	0.85	+1.1
3,518,748	+				+1.1
3,518,748	+				+1.0
3,518,748	+				+1.2
3,518,748	+				+1.0
3,518,749	-				+1.0
3,518,749	-				+0.7
3,518,750	+				+0.9
3,518,750	+				+0.0
3,518,750	+				+0.0
3,518,751	-				+1.7
3,518,751	-				+0.0
3,518,751	-				-1.0
3,518,751	-				+0.0
3,519,562	+		Rru_A3056	0.52	+1.1
3,519,563	-		Rru_A3056	0.52	+0.0
3,519,563	-		Rru_A3056	0.52	-2.0
3,519,563	-		Rru_A3056	0.52	+1.3
3,519,563	-		Rru_A3056	0.52	+0.9
3,519,563	-		Rru_A3056	0.52	+1.0
3,519,584	+		Rru_A3056	0.54	-3.5
3,520,037	+		Rru_A3056	0.85	+0.5
3,520,037	+		Rru_A3056	0.85	+0.9
3,520,039	+		Rru_A3056	0.85	-0.4
3,520,039	+		Rru_A3056	0.85	+1.1
3,520,039	+		Rru_A3056	0.85	+0.5
3,520,039	+		Rru_A3056	0.85	+0.6
3,520,040	-		Rru_A3056	0.85	+0.8
3,520,040	-		Rru_A3056	0.85	+1.0
3,520,040	-		Rru_A3056	0.85	+0.0
3,520,040	-		Rru_A3056	0.85	+1.0
3,520,040	-		Rru_A3056	0.85	-1.0
3,520,040	-		Rru_A3056	0.85	+1.7
3,520,162	+				+0.8
3,520,162	+				+0.0
3,520,163	-				+0.0
3,520,328	+				+1.0
3,520,328	+				+0.8
3,520,328	+				+0.7
3,520,328	+				+0.0
3,520,328	+				+0.0
3,520,328	+				+1.1
3,520,329	-				+0.0
3,520,330	+				+1.2
3,520,330	+				+0.8
3,520,330	+				+0.6
3,520,330	+				+1.0
3,520,330	+				+0.5
3,520,331	-				+0.0
3,520,331	-				+0.8
3,520,493	+		Rru_A3057	0.35	+0.3
3,520,493	+		Rru_A3057	0.35	+0.0
3,520,493	+		Rru_A3057	0.35	+0.0
3,520,640	+		Rru_A3057	0.65	+0.0
3,520,640	+		Rru_A3057	0.65	+1.1
3,520,640	+		Rru_A3057	0.65	+0.7
3,520,640	+		Rru_A3057	0.65	+1.6
3,520,819	+				+0.0
3,520,839	+				+0.0
3,520,839	+				+0.0