Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2982 and Rru_A2983 are separated by 181 nucleotides Rru_A2983 and Rru_A2984 are separated by 202 nucleotides
Rru_A2982: Rru_A2982 - O-methyltransferase, family 2 (NCBI), at 3,433,496 to 3,434,686
_A2982
Rru_A2983: Rru_A2983 - Polyprenyl synthetase (NCBI), at 3,434,868 to 3,435,737
_A2983
Rru_A2984: Rru_A2984 - CrtD protein (NCBI), at 3,435,940 to 3,437,451
_A2984
Position (kb)
3434
3435
3436 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.268 kb on + strand, within Rru_A2982 at 3434.521 kb on - strand, within Rru_A2982 at 3434.604 kb on + strand at 3434.604 kb on + strand at 3434.605 kb on - strand at 3434.925 kb on - strand at 3435.128 kb on - strand, within Rru_A2983 at 3435.436 kb on + strand, within Rru_A2983 at 3435.719 kb on + strand at 3435.719 kb on + strand at 3435.719 kb on + strand at 3435.719 kb on + strand at 3435.816 kb on + strand at 3435.817 kb on - strand at 3435.825 kb on - strand at 3435.932 kb on - strand at 3436.519 kb on + strand, within Rru_A2984 at 3436.520 kb on - strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.529 kb on - strand, within Rru_A2984 at 3436.529 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,434,193 + Rru_A2982 0.59 -1.0 3,434,193 + Rru_A2982 0.59 -0.0 3,434,193 + Rru_A2982 0.59 -0.0 3,434,193 + Rru_A2982 0.59 -0.0 3,434,268 + Rru_A2982 0.65 -0.1 3,434,521 - Rru_A2982 0.86 -3.0 3,434,604 + -0.5 3,434,604 + -0.5 3,434,605 - -1.3 3,434,925 - -0.0 3,435,128 - Rru_A2983 0.30 -0.0 3,435,436 + Rru_A2983 0.65 -1.0 3,435,719 + -0.0 3,435,719 + -0.0 3,435,719 + -0.0 3,435,719 + -0.0 3,435,816 + -0.0 3,435,817 - -0.0 3,435,825 - -0.0 3,435,932 - -1.2 3,436,519 + Rru_A2984 0.38 -0.0 3,436,520 - Rru_A2984 0.38 +0.2 3,436,528 + Rru_A2984 0.39 -0.0 3,436,528 + Rru_A2984 0.39 +1.2 3,436,528 + Rru_A2984 0.39 +0.4 3,436,528 + Rru_A2984 0.39 +0.8 3,436,528 + Rru_A2984 0.39 -0.0 3,436,528 + Rru_A2984 0.39 +1.2 3,436,529 - Rru_A2984 0.39 +0.4 3,436,529 - Rru_A2984 0.39 +0.3 3,436,732 - Rru_A2984 0.52 +1.1 3,436,732 - Rru_A2984 0.52 +1.7 3,436,732 - Rru_A2984 0.52 +1.2 3,436,732 - Rru_A2984 0.52 -0.0 3,436,732 - Rru_A2984 0.52 -0.0
Or see this region's nucleotide sequence