Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2981 and Rru_A2982 are separated by 69 nucleotides Rru_A2982 and Rru_A2983 are separated by 181 nucleotides
Rru_A2981: Rru_A2981 - 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI), at 3,432,473 to 3,433,426
_A2981
Rru_A2982: Rru_A2982 - O-methyltransferase, family 2 (NCBI), at 3,433,496 to 3,434,686
_A2982
Rru_A2983: Rru_A2983 - Polyprenyl synthetase (NCBI), at 3,434,868 to 3,435,737
_A2983
Position (kb)
3433
3434
3435 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.717 kb on + strand, within Rru_A2981 at 3432.718 kb on - strand, within Rru_A2981 at 3432.718 kb on - strand, within Rru_A2981 at 3432.718 kb on - strand, within Rru_A2981 at 3432.770 kb on - strand, within Rru_A2981 at 3432.770 kb on - strand, within Rru_A2981 at 3432.813 kb on + strand, within Rru_A2981 at 3432.820 kb on + strand, within Rru_A2981 at 3432.884 kb on - strand, within Rru_A2981 at 3432.884 kb on - strand, within Rru_A2981 at 3432.884 kb on - strand, within Rru_A2981 at 3433.234 kb on - strand, within Rru_A2981 at 3433.427 kb on - strand at 3433.497 kb on + strand at 3433.616 kb on + strand, within Rru_A2982 at 3433.616 kb on + strand, within Rru_A2982 at 3433.698 kb on + strand, within Rru_A2982 at 3433.699 kb on - strand, within Rru_A2982 at 3433.710 kb on + strand, within Rru_A2982 at 3433.711 kb on - strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.268 kb on + strand, within Rru_A2982 at 3434.521 kb on - strand, within Rru_A2982 at 3434.604 kb on + strand at 3434.604 kb on + strand at 3434.605 kb on - strand at 3434.925 kb on - strand at 3435.128 kb on - strand, within Rru_A2983 at 3435.436 kb on + strand, within Rru_A2983
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,432,717 + Rru_A2981 0.26 -2.0 3,432,717 + Rru_A2981 0.26 -0.0 3,432,717 + Rru_A2981 0.26 -0.0 3,432,717 + Rru_A2981 0.26 -0.0 3,432,717 + Rru_A2981 0.26 -2.0 3,432,718 - Rru_A2981 0.26 -2.1 3,432,718 - Rru_A2981 0.26 -2.8 3,432,718 - Rru_A2981 0.26 -1.6 3,432,770 - Rru_A2981 0.31 -0.0 3,432,770 - Rru_A2981 0.31 -0.0 3,432,813 + Rru_A2981 0.36 -0.0 3,432,820 + Rru_A2981 0.36 -1.0 3,432,884 - Rru_A2981 0.43 -0.0 3,432,884 - Rru_A2981 0.43 -0.0 3,432,884 - Rru_A2981 0.43 -0.0 3,433,234 - Rru_A2981 0.80 -0.0 3,433,427 - -0.0 3,433,497 + -1.0 3,433,616 + Rru_A2982 0.10 -0.4 3,433,616 + Rru_A2982 0.10 -0.0 3,433,698 + Rru_A2982 0.17 -1.1 3,433,699 - Rru_A2982 0.17 -0.0 3,433,710 + Rru_A2982 0.18 -1.0 3,433,711 - Rru_A2982 0.18 -0.0 3,434,193 + Rru_A2982 0.59 -1.0 3,434,193 + Rru_A2982 0.59 -0.0 3,434,193 + Rru_A2982 0.59 -0.0 3,434,193 + Rru_A2982 0.59 -0.0 3,434,268 + Rru_A2982 0.65 -0.1 3,434,521 - Rru_A2982 0.86 -3.0 3,434,604 + -0.5 3,434,604 + -0.5 3,434,605 - -1.3 3,434,925 - -0.0 3,435,128 - Rru_A2983 0.30 -0.0 3,435,436 + Rru_A2983 0.65 -1.0
Or see this region's nucleotide sequence