Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2765 and Rru_A2766 are separated by 44 nucleotides Rru_A2766 and Rru_A2767 are separated by 350 nucleotides
Rru_A2765: Rru_A2765 - GCN5-related N-acetyltransferase (NCBI), at 3,199,864 to 3,200,985
_A2765
Rru_A2766: Rru_A2766 - Protein of unknown function DUF329 (NCBI), at 3,201,030 to 3,201,266
_A2766
Rru_A2767: Rru_A2767 - ribonuclease G (RNase G) (NCBI), at 3,201,617 to 3,202,999
_A2767
Position (kb)
3201
3202 Strain fitness (log2 ratio)
-1
0
1
2 at 3200.173 kb on - strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.282 kb on + strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.283 kb on - strand, within Rru_A2765 at 3200.489 kb on + strand, within Rru_A2765 at 3200.490 kb on - strand, within Rru_A2765 at 3200.570 kb on + strand, within Rru_A2765 at 3200.571 kb on - strand, within Rru_A2765 at 3200.573 kb on + strand, within Rru_A2765 at 3200.573 kb on + strand, within Rru_A2765 at 3200.574 kb on - strand, within Rru_A2765 at 3200.615 kb on + strand, within Rru_A2765 at 3200.615 kb on + strand, within Rru_A2765 at 3200.615 kb on + strand, within Rru_A2765 at 3200.615 kb on + strand, within Rru_A2765 at 3200.616 kb on - strand, within Rru_A2765 at 3200.759 kb on + strand, within Rru_A2765 at 3200.759 kb on + strand, within Rru_A2765 at 3200.760 kb on - strand, within Rru_A2765 at 3201.073 kb on + strand, within Rru_A2766 at 3201.074 kb on - strand, within Rru_A2766 at 3201.074 kb on - strand, within Rru_A2766 at 3201.258 kb on + strand at 3201.259 kb on - strand at 3201.266 kb on + strand at 3201.366 kb on + strand at 3201.367 kb on - strand at 3201.394 kb on + strand at 3201.395 kb on - strand at 3201.409 kb on + strand at 3201.409 kb on + strand at 3201.410 kb on - strand at 3201.436 kb on + strand at 3201.436 kb on + strand at 3201.437 kb on - strand at 3201.437 kb on - strand at 3201.478 kb on - strand at 3201.517 kb on + strand at 3201.518 kb on - strand at 3201.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,200,173 - Rru_A2765 0.28 +1.3 3,200,282 + Rru_A2765 0.37 +0.5 3,200,282 + Rru_A2765 0.37 +1.0 3,200,282 + Rru_A2765 0.37 +1.6 3,200,282 + Rru_A2765 0.37 -0.0 3,200,282 + Rru_A2765 0.37 +1.3 3,200,282 + Rru_A2765 0.37 -0.0 3,200,282 + Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -1.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,283 - Rru_A2765 0.37 -0.0 3,200,489 + Rru_A2765 0.56 +0.9 3,200,490 - Rru_A2765 0.56 +1.4 3,200,570 + Rru_A2765 0.63 -0.0 3,200,571 - Rru_A2765 0.63 +1.7 3,200,573 + Rru_A2765 0.63 -0.0 3,200,573 + Rru_A2765 0.63 -0.0 3,200,574 - Rru_A2765 0.63 +0.8 3,200,615 + Rru_A2765 0.67 -1.0 3,200,615 + Rru_A2765 0.67 +0.9 3,200,615 + Rru_A2765 0.67 -0.0 3,200,615 + Rru_A2765 0.67 -0.0 3,200,616 - Rru_A2765 0.67 -0.0 3,200,759 + Rru_A2765 0.80 -0.0 3,200,759 + Rru_A2765 0.80 +1.4 3,200,760 - Rru_A2765 0.80 +0.9 3,201,073 + Rru_A2766 0.18 +2.4 3,201,074 - Rru_A2766 0.19 +1.1 3,201,074 - Rru_A2766 0.19 -0.1 3,201,258 + -0.0 3,201,259 - +0.9 3,201,266 + +1.1 3,201,366 + +1.0 3,201,367 - +1.6 3,201,394 + +0.8 3,201,395 - +1.7 3,201,409 + +0.6 3,201,409 + +0.7 3,201,410 - +1.1 3,201,436 + -0.0 3,201,436 + -1.0 3,201,437 - +0.8 3,201,437 - +0.8 3,201,478 - +1.1 3,201,517 + -0.0 3,201,518 - -0.0 3,201,518 - +0.8
Or see this region's nucleotide sequence