Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2606 and Rru_A2607 are separated by 240 nucleotides Rru_A2607 and Rru_A2608 are separated by 8 nucleotides Rru_A2608 and Rru_A2609 are separated by 400 nucleotides
Rru_A2606: Rru_A2606 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,030,546 to 3,032,540
_A2606
Rru_A2607: Rru_A2607 - hypothetical protein (NCBI), at 3,032,781 to 3,033,320
_A2607
Rru_A2608: Rru_A2608 - hypothetical protein (NCBI), at 3,033,329 to 3,033,616
_A2608
Rru_A2609: Rru_A2609 - hypothetical protein (NCBI), at 3,034,017 to 3,034,637
_A2609
Position (kb)
3032
3033
3034 Strain fitness (log2 ratio)
-1
0
1
2 at 3031.954 kb on + strand, within Rru_A2606 at 3031.954 kb on + strand, within Rru_A2606 at 3031.955 kb on - strand, within Rru_A2606 at 3031.957 kb on + strand, within Rru_A2606 at 3031.958 kb on - strand, within Rru_A2606 at 3031.958 kb on - strand, within Rru_A2606 at 3031.958 kb on - strand, within Rru_A2606 at 3031.994 kb on - strand, within Rru_A2606 at 3032.387 kb on + strand at 3032.388 kb on - strand at 3032.406 kb on - strand at 3032.608 kb on + strand at 3032.608 kb on + strand at 3032.608 kb on + strand at 3032.608 kb on + strand at 3032.609 kb on - strand at 3032.609 kb on - strand at 3032.609 kb on - strand at 3032.609 kb on - strand at 3032.755 kb on - strand at 3032.825 kb on - strand at 3032.997 kb on + strand, within Rru_A2607 at 3032.998 kb on - strand, within Rru_A2607 at 3033.033 kb on + strand, within Rru_A2607 at 3033.033 kb on + strand, within Rru_A2607 at 3033.034 kb on - strand, within Rru_A2607 at 3033.034 kb on - strand, within Rru_A2607 at 3033.061 kb on + strand, within Rru_A2607 at 3033.061 kb on + strand, within Rru_A2607 at 3033.061 kb on + strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.102 kb on + strand, within Rru_A2607 at 3033.193 kb on + strand, within Rru_A2607 at 3033.194 kb on - strand, within Rru_A2607 at 3033.608 kb on - strand at 3033.614 kb on + strand at 3033.614 kb on + strand at 3033.614 kb on + strand at 3033.615 kb on - strand at 3033.817 kb on + strand at 3033.818 kb on - strand at 3033.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,031,954 + Rru_A2606 0.71 -0.2 3,031,954 + Rru_A2606 0.71 -0.0 3,031,955 - Rru_A2606 0.71 +0.4 3,031,957 + Rru_A2606 0.71 +0.9 3,031,958 - Rru_A2606 0.71 -0.0 3,031,958 - Rru_A2606 0.71 +1.0 3,031,958 - Rru_A2606 0.71 -1.0 3,031,994 - Rru_A2606 0.73 -0.0 3,032,387 + +1.1 3,032,388 - +1.2 3,032,406 - +1.2 3,032,608 + -0.0 3,032,608 + -0.0 3,032,608 + +1.8 3,032,608 + +1.3 3,032,609 - -0.0 3,032,609 - +1.2 3,032,609 - -0.0 3,032,609 - -0.0 3,032,755 - +1.0 3,032,825 - +1.7 3,032,997 + Rru_A2607 0.40 +1.2 3,032,998 - Rru_A2607 0.40 -0.0 3,033,033 + Rru_A2607 0.47 +0.9 3,033,033 + Rru_A2607 0.47 +0.8 3,033,034 - Rru_A2607 0.47 +0.9 3,033,034 - Rru_A2607 0.47 +0.2 3,033,061 + Rru_A2607 0.52 +0.7 3,033,061 + Rru_A2607 0.52 +0.4 3,033,061 + Rru_A2607 0.52 -0.0 3,033,062 - Rru_A2607 0.52 +1.3 3,033,062 - Rru_A2607 0.52 +1.0 3,033,062 - Rru_A2607 0.52 +1.0 3,033,062 - Rru_A2607 0.52 +1.1 3,033,062 - Rru_A2607 0.52 -0.0 3,033,102 + Rru_A2607 0.59 -1.0 3,033,193 + Rru_A2607 0.76 +1.4 3,033,194 - Rru_A2607 0.76 +1.0 3,033,608 - -0.0 3,033,614 + +1.5 3,033,614 + -0.0 3,033,614 + +0.9 3,033,615 - -0.0 3,033,817 + -0.0 3,033,818 - -1.0 3,033,938 + +1.0
Or see this region's nucleotide sequence