Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2456

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2454 and Rru_A2455 are separated by 385 nucleotidesRru_A2455 and Rru_A2456 are separated by 122 nucleotidesRru_A2456 and Rru_A2457 are separated by 108 nucleotidesRru_A2457 and Rru_A2458 are separated by 12 nucleotides Rru_A2454: Rru_A2454 - hypothetical protein (NCBI), at 2,852,859 to 2,853,830 _A2454 Rru_A2455: Rru_A2455 - hypothetical protein (NCBI), at 2,854,216 to 2,854,377 _A2455 Rru_A2456: Rru_A2456 - Phosphoglycerate dehydrogenase (NCBI), at 2,854,500 to 2,855,735 _A2456 Rru_A2457: Rru_A2457 - Endoribonuclease L-PSP (NCBI), at 2,855,844 to 2,856,305 _A2457 Rru_A2458: Rru_A2458 - Protein of unknown function DUF482 (NCBI), at 2,856,318 to 2,857,589 _A2458 Position (kb) 2854 2855 2856Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2853.520 kb on - strand, within Rru_A2454at 2853.708 kb on + strand, within Rru_A2454at 2853.987 kb on + strandat 2854.011 kb on - strandat 2854.011 kb on - strandat 2854.288 kb on + strand, within Rru_A2455at 2854.288 kb on + strand, within Rru_A2455at 2854.288 kb on + strand, within Rru_A2455at 2854.502 kb on - strandat 2854.502 kb on - strandat 2854.502 kb on - strandat 2855.839 kb on + strandat 2855.839 kb on + strandat 2856.351 kb on + strandat 2856.351 kb on + strandat 2856.351 kb on + strandat 2856.435 kb on - strandat 2856.504 kb on - strand, within Rru_A2458at 2856.504 kb on - strand, within Rru_A2458at 2856.636 kb on + strand, within Rru_A2458at 2856.637 kb on - strand, within Rru_A2458at 2856.655 kb on - strand, within Rru_A2458at 2856.663 kb on + strand, within Rru_A2458at 2856.663 kb on + strand, within Rru_A2458at 2856.663 kb on + strand, within Rru_A2458at 2856.663 kb on + strand, within Rru_A2458at 2856.693 kb on + strand, within Rru_A2458at 2856.694 kb on - strand, within Rru_A2458at 2856.714 kb on + strand, within Rru_A2458at 2856.715 kb on - strand, within Rru_A2458at 2856.715 kb on - strand, within Rru_A2458at 2856.715 kb on - strand, within Rru_A2458at 2856.717 kb on + strand, within Rru_A2458at 2856.718 kb on - strand, within Rru_A2458at 2856.718 kb on - strand, within Rru_A2458

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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2,853,520 - Rru_A2454 0.68 -0.1
2,853,708 + Rru_A2454 0.87 +1.0
2,853,987 + +1.2
2,854,011 - +1.4
2,854,011 - -0.1
2,854,288 + Rru_A2455 0.44 -0.1
2,854,288 + Rru_A2455 0.44 -2.4
2,854,288 + Rru_A2455 0.44 -0.1
2,854,502 - -0.1
2,854,502 - -0.1
2,854,502 - -0.1
2,855,839 + +2.9
2,855,839 + -0.1
2,856,351 + -0.1
2,856,351 + +0.9
2,856,351 + +1.0
2,856,435 - -0.1
2,856,504 - Rru_A2458 0.15 +1.4
2,856,504 - Rru_A2458 0.15 -0.1
2,856,636 + Rru_A2458 0.25 -0.1
2,856,637 - Rru_A2458 0.25 +1.1
2,856,655 - Rru_A2458 0.26 -0.1
2,856,663 + Rru_A2458 0.27 +2.3
2,856,663 + Rru_A2458 0.27 -0.1
2,856,663 + Rru_A2458 0.27 +0.9
2,856,663 + Rru_A2458 0.27 +0.7
2,856,693 + Rru_A2458 0.29 +0.2
2,856,694 - Rru_A2458 0.30 +0.9
2,856,714 + Rru_A2458 0.31 -1.1
2,856,715 - Rru_A2458 0.31 -0.1
2,856,715 - Rru_A2458 0.31 -0.1
2,856,715 - Rru_A2458 0.31 +2.0
2,856,717 + Rru_A2458 0.31 +1.4
2,856,718 - Rru_A2458 0.31 -0.1
2,856,718 - Rru_A2458 0.31 -0.1

Or see this region's nucleotide sequence