Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2454 and Rru_A2455 are separated by 385 nucleotides Rru_A2455 and Rru_A2456 are separated by 122 nucleotides Rru_A2456 and Rru_A2457 are separated by 108 nucleotides Rru_A2457 and Rru_A2458 are separated by 12 nucleotides
Rru_A2454: Rru_A2454 - hypothetical protein (NCBI), at 2,852,859 to 2,853,830
_A2454
Rru_A2455: Rru_A2455 - hypothetical protein (NCBI), at 2,854,216 to 2,854,377
_A2455
Rru_A2456: Rru_A2456 - Phosphoglycerate dehydrogenase (NCBI), at 2,854,500 to 2,855,735
_A2456
Rru_A2457: Rru_A2457 - Endoribonuclease L-PSP (NCBI), at 2,855,844 to 2,856,305
_A2457
Rru_A2458: Rru_A2458 - Protein of unknown function DUF482 (NCBI), at 2,856,318 to 2,857,589
_A2458
Position (kb)
2854
2855
2856 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2853.520 kb on - strand, within Rru_A2454 at 2853.708 kb on + strand, within Rru_A2454 at 2853.987 kb on + strand at 2854.011 kb on - strand at 2854.011 kb on - strand at 2854.288 kb on + strand, within Rru_A2455 at 2854.288 kb on + strand, within Rru_A2455 at 2854.288 kb on + strand, within Rru_A2455 at 2854.502 kb on - strand at 2854.502 kb on - strand at 2854.502 kb on - strand at 2855.839 kb on + strand at 2855.839 kb on + strand at 2856.351 kb on + strand at 2856.351 kb on + strand at 2856.351 kb on + strand at 2856.435 kb on - strand at 2856.504 kb on - strand, within Rru_A2458 at 2856.504 kb on - strand, within Rru_A2458 at 2856.636 kb on + strand, within Rru_A2458 at 2856.637 kb on - strand, within Rru_A2458 at 2856.655 kb on - strand, within Rru_A2458 at 2856.663 kb on + strand, within Rru_A2458 at 2856.663 kb on + strand, within Rru_A2458 at 2856.663 kb on + strand, within Rru_A2458 at 2856.663 kb on + strand, within Rru_A2458 at 2856.693 kb on + strand, within Rru_A2458 at 2856.694 kb on - strand, within Rru_A2458 at 2856.714 kb on + strand, within Rru_A2458 at 2856.715 kb on - strand, within Rru_A2458 at 2856.715 kb on - strand, within Rru_A2458 at 2856.715 kb on - strand, within Rru_A2458 at 2856.717 kb on + strand, within Rru_A2458 at 2856.718 kb on - strand, within Rru_A2458 at 2856.718 kb on - strand, within Rru_A2458
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,853,520 - Rru_A2454 0.68 -0.1 2,853,708 + Rru_A2454 0.87 +1.0 2,853,987 + +1.2 2,854,011 - +1.4 2,854,011 - -0.1 2,854,288 + Rru_A2455 0.44 -0.1 2,854,288 + Rru_A2455 0.44 -2.4 2,854,288 + Rru_A2455 0.44 -0.1 2,854,502 - -0.1 2,854,502 - -0.1 2,854,502 - -0.1 2,855,839 + +2.9 2,855,839 + -0.1 2,856,351 + -0.1 2,856,351 + +0.9 2,856,351 + +1.0 2,856,435 - -0.1 2,856,504 - Rru_A2458 0.15 +1.4 2,856,504 - Rru_A2458 0.15 -0.1 2,856,636 + Rru_A2458 0.25 -0.1 2,856,637 - Rru_A2458 0.25 +1.1 2,856,655 - Rru_A2458 0.26 -0.1 2,856,663 + Rru_A2458 0.27 +2.3 2,856,663 + Rru_A2458 0.27 -0.1 2,856,663 + Rru_A2458 0.27 +0.9 2,856,663 + Rru_A2458 0.27 +0.7 2,856,693 + Rru_A2458 0.29 +0.2 2,856,694 - Rru_A2458 0.30 +0.9 2,856,714 + Rru_A2458 0.31 -1.1 2,856,715 - Rru_A2458 0.31 -0.1 2,856,715 - Rru_A2458 0.31 -0.1 2,856,715 - Rru_A2458 0.31 +2.0 2,856,717 + Rru_A2458 0.31 +1.4 2,856,718 - Rru_A2458 0.31 -0.1 2,856,718 - Rru_A2458 0.31 -0.1
Or see this region's nucleotide sequence