Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2400

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,793,529	+		Rru_A2399	0.22	+0.9
2,793,529	+		Rru_A2399	0.22	-0.1
2,793,529	+		Rru_A2399	0.22	-0.1
2,793,598	+		Rru_A2399	0.28	-0.1
2,793,598	+		Rru_A2399	0.28	-0.1
2,793,598	+		Rru_A2399	0.28	-0.1
2,793,599	-		Rru_A2399	0.28	-0.1
2,793,600	+		Rru_A2399	0.28	-0.1
2,793,619	+		Rru_A2399	0.30	-0.1
2,793,619	+		Rru_A2399	0.30	-1.1
2,793,620	-		Rru_A2399	0.30	-0.1
2,793,629	-		Rru_A2399	0.31	-1.1
2,793,946	+		Rru_A2399	0.60	-0.1
2,793,965	+		Rru_A2399	0.61	-0.1
2,793,982	+		Rru_A2399	0.63	-0.1
2,794,048	+		Rru_A2399	0.69	-0.1
2,794,048	+		Rru_A2399	0.69	-0.1
2,794,048	+		Rru_A2399	0.69	-0.1
2,794,049	-		Rru_A2399	0.69	-0.1
2,794,208	-		Rru_A2399	0.83	-0.1
2,794,241	-		Rru_A2399	0.86	-0.1
2,794,241	-		Rru_A2399	0.86	+1.5
2,794,565	+				+1.6
2,794,631	+				-0.1
2,794,631	+				-0.1
2,794,755	+		Rru_A2400	0.18	-0.1
2,794,819	-		Rru_A2400	0.22	-0.1
2,794,819	-		Rru_A2400	0.22	+1.6
2,794,850	+		Rru_A2400	0.24	-1.1
2,794,851	-		Rru_A2400	0.25	-0.1
2,794,851	-		Rru_A2400	0.25	-0.5
2,794,884	+		Rru_A2400	0.27	-2.1
2,794,884	+		Rru_A2400	0.27	-1.4
2,794,884	+		Rru_A2400	0.27	-0.9
2,794,884	+		Rru_A2400	0.27	-0.9
2,794,885	-		Rru_A2400	0.27	-0.1
2,794,885	-		Rru_A2400	0.27	-1.1
2,794,885	-		Rru_A2400	0.27	-0.1
2,794,885	-		Rru_A2400	0.27	-0.1
2,794,885	-		Rru_A2400	0.27	-0.1
2,794,886	+		Rru_A2400	0.27	-1.8
2,794,886	+		Rru_A2400	0.27	-1.4
2,794,887	-		Rru_A2400	0.27	-0.1
2,794,887	-		Rru_A2400	0.27	-0.1
2,794,887	-		Rru_A2400	0.27	-3.1
2,794,998	+		Rru_A2400	0.35	-0.3
2,794,998	+		Rru_A2400	0.35	-0.1
2,794,999	-		Rru_A2400	0.35	-1.7
2,795,051	+		Rru_A2400	0.39	-1.3
2,795,052	-		Rru_A2400	0.39	+0.1
2,795,114	+		Rru_A2400	0.43	-2.5
2,795,114	+		Rru_A2400	0.43	-1.7
2,795,115	-		Rru_A2400	0.43	-2.4
2,795,172	-		Rru_A2400	0.47	-0.4
2,795,172	-		Rru_A2400	0.47	-2.7
2,795,172	-		Rru_A2400	0.47	-0.1
2,795,172	-		Rru_A2400	0.47	-1.3
2,795,172	-		Rru_A2400	0.47	-0.1
2,795,214	+		Rru_A2400	0.50	-1.3
2,795,481	+		Rru_A2400	0.70	-1.1
2,795,482	-		Rru_A2400	0.70	-2.1
2,795,482	-		Rru_A2400	0.70	-0.1
2,795,529	-		Rru_A2400	0.73	-0.1
2,795,693	+		Rru_A2400	0.85	-1.8
2,795,693	+		Rru_A2400	0.85	-1.9
2,795,693	+		Rru_A2400	0.85	-0.1
2,795,693	+		Rru_A2400	0.85	-0.1
2,795,693	+		Rru_A2400	0.85	-2.1
2,795,693	+		Rru_A2400	0.85	-0.1
2,795,694	-		Rru_A2400	0.85	-1.3
2,795,694	-		Rru_A2400	0.85	-0.1
2,795,694	-		Rru_A2400	0.85	-0.1
2,795,694	-		Rru_A2400	0.85	-1.1
2,795,795	+				-0.1
2,795,795	+				-0.8
2,795,795	+				-0.1
2,795,795	+				-0.1
2,795,796	-				-0.3
2,795,823	+				-2.1
2,795,823	+				-0.1
2,795,824	-				-0.8
2,795,824	-				-1.1
2,795,824	-				-0.1
2,795,824	-				-0.8
2,795,824	-				-0.1
2,795,825	+				-0.1
2,795,825	+				-0.1
2,795,825	+				-2.3
2,795,825	+				-0.6
2,795,826	-				-1.1
2,795,826	-				-1.7
2,795,826	-				-2.3
2,795,826	-				-0.7
2,795,826	-				-0.1
2,795,826	-				-0.1
2,795,888	+				-0.3
2,795,888	+				-1.1
2,795,889	-				-0.7
2,795,889	-				-1.4
2,795,922	+				-1.1
2,795,922	+				-0.1
2,795,922	+				-0.1
2,795,923	-				+0.9
2,795,945	+				-0.8
2,795,945	+				-1.0
2,795,945	+				-0.9
2,795,945	+				-0.1
2,795,946	-				-0.1
2,795,946	-				-0.1
2,795,946	-				-0.1
2,795,946	-				-0.1
2,796,171	+		Rru_A2401	0.15	-1.1
2,796,171	+		Rru_A2401	0.15	-0.0
2,796,172	-		Rru_A2401	0.15	-0.1
2,796,172	-		Rru_A2401	0.15	+1.5
2,796,172	-		Rru_A2401	0.15	+1.2
2,796,172	-		Rru_A2401	0.15	+0.9
2,796,172	-		Rru_A2401	0.15	+0.9
2,796,368	-		Rru_A2401	0.35	-0.1
2,796,663	+		Rru_A2401	0.67	-0.1