Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2201

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,554,306	+		Rru_A2199	0.84	+2.0
2,554,307	-		Rru_A2199	0.84	-0.1
2,554,307	-		Rru_A2199	0.84	-0.1
2,554,307	-		Rru_A2199	0.84	-0.1
2,554,307	-		Rru_A2199	0.84	-0.1
2,554,307	-		Rru_A2199	0.84	-0.1
2,554,307	-		Rru_A2199	0.84	-0.1
2,554,307	-		Rru_A2199	0.84	+1.0
2,554,477	+				-2.1
2,554,478	-				-0.1
2,554,478	-				-0.1
2,554,478	-				-0.1
2,554,478	-				+1.0
2,554,478	-				-0.1
2,554,478	-				-1.1
2,554,478	-				-0.1
2,554,478	-				+2.3
2,554,478	-				+1.6
2,554,478	-				+1.7
2,554,519	+				+0.8
2,554,568	-				-0.1
2,554,568	-				-1.1
2,554,584	-				-0.9
2,554,615	+				-0.1
2,554,616	-				+1.0
2,554,629	+				-0.1
2,554,630	-				-0.1
2,554,665	-				+0.9
2,554,666	+				+2.0
2,554,666	+				-0.1
2,554,667	-				-0.1
2,554,667	-				+1.7
2,554,685	+				-0.1
2,554,685	+				+0.5
2,554,685	+				-1.7
2,554,710	+				-0.1
2,554,717	+				+0.9
2,554,718	-				-0.1
2,554,718	-				-0.1
2,554,785	+		Rru_A2200	0.16	+1.1
2,554,785	+		Rru_A2200	0.16	-0.1
2,554,785	+		Rru_A2200	0.16	-0.1
2,554,786	-		Rru_A2200	0.16	+0.9
2,555,165	+				+1.2
2,555,165	+				+0.8
2,555,172	+				-0.1
2,555,173	-				-0.1
2,555,202	+				+1.2
2,555,202	+				-0.1
2,555,295	-				+0.4
2,556,067	-		Rru_A2201	0.51	+0.1
2,556,123	+		Rru_A2201	0.54	+0.9
2,556,158	+		Rru_A2201	0.57	-1.7
2,556,158	+		Rru_A2201	0.57	-0.1
2,556,158	+		Rru_A2201	0.57	-0.6
2,556,159	-		Rru_A2201	0.57	+0.8
2,556,159	-		Rru_A2201	0.57	+0.2
2,556,441	+		Rru_A2201	0.75	-0.1
2,556,441	+		Rru_A2201	0.75	-0.1
2,556,443	+		Rru_A2201	0.75	-0.1
2,556,444	-		Rru_A2201	0.75	-0.1
2,556,996	+				-0.1
2,556,997	-				+0.6
2,556,997	-				+0.4