Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2166 and Rru_A2167 are separated by 130 nucleotides Rru_A2167 and Rru_A2168 overlap by 4 nucleotides Rru_A2168 and Rru_A2169 are separated by 99 nucleotides
Rru_A2166: Rru_A2166 - hypothetical protein (NCBI), at 2,514,791 to 2,516,128
_A2166
Rru_A2167: Rru_A2167 - Phosphoribosylformylglycinamidine cyclo-ligase (NCBI), at 2,516,259 to 2,517,425
_A2167
Rru_A2168: Rru_A2168 - Phosphoribosylglycinamide formyltransferase (NCBI), at 2,517,422 to 2,518,096
_A2168
Rru_A2169: Rru_A2169 - Nucleoside-diphosphate kinase (NCBI), at 2,518,196 to 2,518,618
_A2169
Position (kb)
2516
2517
2518 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2515.312 kb on - strand, within Rru_A2166 at 2515.312 kb on - strand, within Rru_A2166 at 2515.312 kb on - strand, within Rru_A2166 at 2515.341 kb on + strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.342 kb on - strand, within Rru_A2166 at 2515.690 kb on + strand, within Rru_A2166 at 2515.691 kb on - strand, within Rru_A2166 at 2515.691 kb on - strand, within Rru_A2166 at 2515.821 kb on + strand, within Rru_A2166 at 2516.153 kb on - strand at 2516.155 kb on - strand at 2516.155 kb on - strand at 2516.155 kb on - strand at 2516.379 kb on + strand, within Rru_A2167 at 2516.537 kb on + strand, within Rru_A2167 at 2516.679 kb on + strand, within Rru_A2167 at 2516.802 kb on + strand, within Rru_A2167 at 2516.802 kb on + strand, within Rru_A2167 at 2516.817 kb on + strand, within Rru_A2167 at 2517.048 kb on + strand, within Rru_A2167 at 2517.104 kb on + strand, within Rru_A2167 at 2518.197 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,515,312 - Rru_A2166 0.39 -1.1 2,515,312 - Rru_A2166 0.39 -0.7 2,515,312 - Rru_A2166 0.39 +1.5 2,515,341 + Rru_A2166 0.41 -1.1 2,515,342 - Rru_A2166 0.41 -0.4 2,515,342 - Rru_A2166 0.41 -0.1 2,515,342 - Rru_A2166 0.41 -0.1 2,515,342 - Rru_A2166 0.41 -0.1 2,515,342 - Rru_A2166 0.41 +0.4 2,515,690 + Rru_A2166 0.67 -0.1 2,515,691 - Rru_A2166 0.67 -1.1 2,515,691 - Rru_A2166 0.67 -0.1 2,515,821 + Rru_A2166 0.77 -0.1 2,516,153 - -0.1 2,516,155 - +1.9 2,516,155 - +1.5 2,516,155 - -2.1 2,516,379 + Rru_A2167 0.10 +0.9 2,516,537 + Rru_A2167 0.24 -0.1 2,516,679 + Rru_A2167 0.36 +0.9 2,516,802 + Rru_A2167 0.47 +0.3 2,516,802 + Rru_A2167 0.47 +0.3 2,516,817 + Rru_A2167 0.48 -0.7 2,517,048 + Rru_A2167 0.68 -0.1 2,517,104 + Rru_A2167 0.72 -1.1 2,518,197 + -0.1
Or see this region's nucleotide sequence