Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2135 and Rru_A2136 are separated by 421 nucleotides Rru_A2136 and Rru_A2137 are separated by 0 nucleotides Rru_A2137 and Rru_A2138 overlap by 4 nucleotides Rru_A2138 and Rru_A2139 overlap by 4 nucleotides
Rru_A2135: Rru_A2135 - Twin-arginine translocation pathway signal (NCBI), at 2,480,331 to 2,481,917
_A2135
Rru_A2136: Rru_A2136 - hypothetical protein (NCBI), at 2,482,339 to 2,482,911
_A2136
Rru_A2137: Rru_A2137 - Protein of unknown function DUF847 (NCBI), at 2,482,912 to 2,483,514
_A2137
Rru_A2138: Rru_A2138 - hypothetical protein (NCBI), at 2,483,511 to 2,483,726
_A2138
Rru_A2139: Rru_A2139 - hypothetical protein (NCBI), at 2,483,723 to 2,483,974
_A2139
Position (kb)
2482
2483 Strain fitness (log2 ratio)
-1
0
1
2 at 2481.983 kb on - strand at 2482.154 kb on - strand at 2482.200 kb on - strand at 2482.200 kb on - strand at 2482.206 kb on - strand at 2482.206 kb on - strand at 2482.206 kb on - strand at 2482.211 kb on - strand at 2482.211 kb on - strand at 2482.211 kb on - strand at 2482.347 kb on + strand at 2482.562 kb on + strand, within Rru_A2136 at 2482.562 kb on + strand, within Rru_A2136 at 2482.563 kb on - strand, within Rru_A2136 at 2482.616 kb on + strand, within Rru_A2136 at 2482.616 kb on + strand, within Rru_A2136 at 2482.617 kb on - strand, within Rru_A2136 at 2482.617 kb on - strand, within Rru_A2136 at 2482.731 kb on + strand, within Rru_A2136 at 2482.732 kb on - strand, within Rru_A2136 at 2482.776 kb on - strand, within Rru_A2136 at 2483.194 kb on - strand, within Rru_A2137 at 2483.276 kb on + strand, within Rru_A2137 at 2483.277 kb on - strand, within Rru_A2137 at 2483.314 kb on - strand, within Rru_A2137 at 2483.322 kb on + strand, within Rru_A2137 at 2483.427 kb on - strand, within Rru_A2137 at 2483.880 kb on + strand, within Rru_A2139 at 2483.881 kb on - strand, within Rru_A2139 at 2483.881 kb on - strand, within Rru_A2139
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,481,983 - +0.9 2,482,154 - -0.1 2,482,200 - -0.1 2,482,200 - -0.1 2,482,206 - +2.4 2,482,206 - +1.5 2,482,206 - +1.2 2,482,211 - -0.1 2,482,211 - +1.0 2,482,211 - +1.5 2,482,347 + -1.7 2,482,562 + Rru_A2136 0.39 -0.1 2,482,562 + Rru_A2136 0.39 -0.1 2,482,563 - Rru_A2136 0.39 -0.1 2,482,616 + Rru_A2136 0.48 +1.5 2,482,616 + Rru_A2136 0.48 +1.2 2,482,617 - Rru_A2136 0.49 -0.1 2,482,617 - Rru_A2136 0.49 +0.2 2,482,731 + Rru_A2136 0.68 -0.1 2,482,732 - Rru_A2136 0.69 -0.1 2,482,776 - Rru_A2136 0.76 +0.4 2,483,194 - Rru_A2137 0.47 -0.1 2,483,276 + Rru_A2137 0.60 +1.1 2,483,277 - Rru_A2137 0.61 -0.1 2,483,314 - Rru_A2137 0.67 +0.9 2,483,322 + Rru_A2137 0.68 +1.1 2,483,427 - Rru_A2137 0.85 +0.8 2,483,880 + Rru_A2139 0.62 +0.7 2,483,881 - Rru_A2139 0.63 +0.6 2,483,881 - Rru_A2139 0.63 -1.1
Or see this region's nucleotide sequence