Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2090 and Rru_A2091 are separated by 256 nucleotides Rru_A2091 and Rru_A2092 are separated by 62 nucleotides Rru_A2092 and Rru_A2093 are separated by 254 nucleotides
Rru_A2090: Rru_A2090 - ABC transporter component (NCBI), at 2,418,224 to 2,418,967
_A2090
Rru_A2091: Rru_A2091 - hypothetical protein (NCBI), at 2,419,224 to 2,419,481
_A2091
Rru_A2092: Rru_A2092 - hypothetical protein (NCBI), at 2,419,544 to 2,419,960
_A2092
Rru_A2093: Rru_A2093 - Methyltransferase FkbM (NCBI), at 2,420,215 to 2,420,973
_A2093
Position (kb)
2419
2420 Strain fitness (log2 ratio)
-1
0
1
2 at 2418.965 kb on + strand at 2419.294 kb on - strand, within Rru_A2091 at 2419.302 kb on + strand, within Rru_A2091 at 2419.303 kb on - strand, within Rru_A2091 at 2419.919 kb on + strand at 2419.919 kb on + strand at 2419.920 kb on - strand at 2419.920 kb on - strand at 2419.920 kb on - strand at 2419.927 kb on - strand at 2419.979 kb on + strand at 2419.981 kb on + strand at 2419.982 kb on - strand at 2420.025 kb on + strand at 2420.327 kb on - strand, within Rru_A2093 at 2420.375 kb on + strand, within Rru_A2093 at 2420.463 kb on + strand, within Rru_A2093 at 2420.539 kb on + strand, within Rru_A2093 at 2420.539 kb on + strand, within Rru_A2093 at 2420.539 kb on + strand, within Rru_A2093 at 2420.539 kb on + strand, within Rru_A2093 at 2420.540 kb on - strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.896 kb on + strand, within Rru_A2093 at 2420.897 kb on - strand, within Rru_A2093 at 2420.897 kb on - strand, within Rru_A2093 at 2420.897 kb on - strand, within Rru_A2093 at 2420.897 kb on - strand, within Rru_A2093 at 2420.897 kb on - strand, within Rru_A2093
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,418,965 + +1.2 2,419,294 - Rru_A2091 0.27 +0.1 2,419,302 + Rru_A2091 0.30 +0.6 2,419,303 - Rru_A2091 0.31 -0.1 2,419,919 + -0.1 2,419,919 + -0.1 2,419,920 - +0.6 2,419,920 - +1.3 2,419,920 - -0.1 2,419,927 - +0.9 2,419,979 + -1.1 2,419,981 + +0.3 2,419,982 - -0.1 2,420,025 + +0.6 2,420,327 - Rru_A2093 0.15 +2.2 2,420,375 + Rru_A2093 0.21 -0.1 2,420,463 + Rru_A2093 0.33 +1.2 2,420,539 + Rru_A2093 0.43 +0.9 2,420,539 + Rru_A2093 0.43 -0.1 2,420,539 + Rru_A2093 0.43 -0.1 2,420,539 + Rru_A2093 0.43 -0.1 2,420,540 - Rru_A2093 0.43 +0.5 2,420,896 + Rru_A2093 0.90 +1.0 2,420,896 + Rru_A2093 0.90 +0.8 2,420,896 + Rru_A2093 0.90 +1.4 2,420,896 + Rru_A2093 0.90 -0.1 2,420,896 + Rru_A2093 0.90 -0.1 2,420,896 + Rru_A2093 0.90 +1.2 2,420,896 + Rru_A2093 0.90 -0.1 2,420,896 + Rru_A2093 0.90 +0.5 2,420,897 - Rru_A2093 0.90 +0.7 2,420,897 - Rru_A2093 0.90 +1.0 2,420,897 - Rru_A2093 0.90 +0.8 2,420,897 - Rru_A2093 0.90 -0.1 2,420,897 - Rru_A2093 0.90 -0.1
Or see this region's nucleotide sequence