Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2014

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,327,346	+		Rru_A2013	0.11	+1.5
2,327,375	+		Rru_A2013	0.14	+1.1
2,327,375	+		Rru_A2013	0.14	-0.1
2,327,600	+		Rru_A2013	0.37	-0.1
2,327,601	-		Rru_A2013	0.37	-0.1
2,327,601	-		Rru_A2013	0.37	+0.8
2,327,601	-		Rru_A2013	0.37	-0.1
2,327,646	+		Rru_A2013	0.42	-0.1
2,327,786	+		Rru_A2013	0.56	-0.1
2,327,787	-		Rru_A2013	0.56	-0.1
2,327,787	-		Rru_A2013	0.56	+1.0
2,327,817	+		Rru_A2013	0.59	+1.1
2,327,818	-		Rru_A2013	0.59	-2.1
2,327,829	+		Rru_A2013	0.60	+1.1
2,327,829	+		Rru_A2013	0.60	+0.9
2,327,830	-		Rru_A2013	0.61	+1.1
2,327,830	-		Rru_A2013	0.61	-0.1
2,327,830	-		Rru_A2013	0.61	-0.1
2,327,830	-		Rru_A2013	0.61	-0.1
2,327,957	+		Rru_A2013	0.73	-0.1
2,327,957	+		Rru_A2013	0.73	-0.1
2,327,958	-		Rru_A2013	0.74	-0.1
2,327,958	-		Rru_A2013	0.74	+1.2
2,327,958	-		Rru_A2013	0.74	+1.4
2,327,969	+		Rru_A2013	0.75	+1.5
2,328,003	-		Rru_A2013	0.78	+0.6
2,328,003	-		Rru_A2013	0.78	+0.8
2,328,003	-		Rru_A2013	0.78	-0.1
2,328,003	-		Rru_A2013	0.78	-0.1
2,328,041	+		Rru_A2013	0.82	+1.2
2,328,042	-		Rru_A2013	0.82	-0.1
2,328,042	-		Rru_A2013	0.82	-0.1
2,328,042	-		Rru_A2013	0.82	+0.5
2,328,277	-				+2.2
2,328,283	+				-0.1
2,328,283	+				+0.8
2,328,284	-				-0.1
2,328,299	+				+0.2
2,328,332	+				-0.1
2,328,332	+				+0.7
2,328,335	+				-0.1
2,328,335	+				+0.4
2,328,336	-				+1.4
2,328,336	-				-1.1
2,328,356	+				+1.2
2,328,436	+				-0.1
2,328,637	+		Rru_A2014	0.22	+0.8
2,328,637	+		Rru_A2014	0.22	+0.7
2,328,638	-		Rru_A2014	0.22	-0.1
2,328,638	-		Rru_A2014	0.22	-1.1
2,328,638	-		Rru_A2014	0.22	+1.0
2,328,872	-		Rru_A2014	0.37	-0.1
2,328,872	-		Rru_A2014	0.37	+0.9
2,328,925	+		Rru_A2014	0.40	+2.1
2,328,926	-		Rru_A2014	0.40	-1.1
2,328,926	-		Rru_A2014	0.40	+0.6
2,329,029	-		Rru_A2014	0.47	-0.1
2,329,029	-		Rru_A2014	0.47	+0.2
2,329,121	+		Rru_A2014	0.52	+1.2
2,329,121	+		Rru_A2014	0.52	+1.6
2,329,122	-		Rru_A2014	0.52	+1.2
2,329,123	+		Rru_A2014	0.52	+1.1
2,329,231	+		Rru_A2014	0.59	+0.8
2,329,256	+		Rru_A2014	0.61	-1.1
2,329,256	+		Rru_A2014	0.61	+1.4
2,329,257	-		Rru_A2014	0.61	+1.4
2,329,258	+		Rru_A2014	0.61	+0.8
2,329,313	+		Rru_A2014	0.64	-0.1
2,329,369	+		Rru_A2014	0.68	+1.0
2,329,369	+		Rru_A2014	0.68	+1.8
2,329,370	-		Rru_A2014	0.68	+1.3
2,329,370	-		Rru_A2014	0.68	-0.1
2,329,370	-		Rru_A2014	0.68	-0.1
2,329,421	+		Rru_A2014	0.71	-0.2
2,329,424	-		Rru_A2014	0.71	-0.1
2,329,471	+		Rru_A2014	0.74	-0.1
2,329,471	+		Rru_A2014	0.74	+0.6
2,329,471	+		Rru_A2014	0.74	-0.1
2,329,472	-		Rru_A2014	0.74	-0.1
2,329,492	+		Rru_A2014	0.75	+1.1
2,329,493	-		Rru_A2014	0.75	+0.5
2,329,493	-		Rru_A2014	0.75	+1.8
2,329,528	+		Rru_A2014	0.78	-0.1
2,329,529	-		Rru_A2014	0.78	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	+0.9
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,706	-		Rru_A2014	0.89	+0.9
2,329,706	-		Rru_A2014	0.89	+0.8
2,329,706	-		Rru_A2014	0.89	+0.8
2,329,706	-		Rru_A2014	0.89	+1.2
2,329,886	+				+1.3
2,330,018	+				+1.5
2,330,254	+				+1.5
2,330,476	+		Rru_A2015	0.29	-0.1
2,330,476	+		Rru_A2015	0.29	+1.1
2,330,476	+		Rru_A2015	0.29	+0.9
2,330,476	+		Rru_A2015	0.29	+0.1
2,330,476	+		Rru_A2015	0.29	+2.0
2,330,476	+		Rru_A2015	0.29	+1.5
2,330,477	-		Rru_A2015	0.29	+0.9
2,330,477	-		Rru_A2015	0.29	-1.1
2,330,477	-		Rru_A2015	0.29	+1.2
2,330,488	+		Rru_A2015	0.30	+0.1
2,330,515	+		Rru_A2015	0.33	+0.9
2,330,516	-		Rru_A2015	0.33	-0.1