Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1676 and Rru_A1677 are separated by 2 nucleotides Rru_A1677 and Rru_A1678 are separated by 98 nucleotides
Rru_A1676: Rru_A1676 - Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI), at 1,965,546 to 1,966,634
_A1676
Rru_A1677: Rru_A1677 - Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI), at 1,966,637 to 1,967,737
_A1677
Rru_A1678: Rru_A1678 - Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI), at 1,967,836 to 1,969,281
_A1678
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1965.645 kb on + strand at 1965.645 kb on + strand at 1965.646 kb on - strand at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.092 kb on + strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.093 kb on - strand, within Rru_A1676 at 1966.394 kb on + strand, within Rru_A1676 at 1966.394 kb on + strand, within Rru_A1676 at 1966.412 kb on + strand, within Rru_A1676 at 1966.412 kb on + strand, within Rru_A1676 at 1966.423 kb on - strand, within Rru_A1676 at 1966.464 kb on + strand, within Rru_A1676 at 1966.464 kb on + strand, within Rru_A1676 at 1966.464 kb on + strand, within Rru_A1676 at 1966.465 kb on - strand, within Rru_A1676 at 1966.465 kb on - strand, within Rru_A1676 at 1966.466 kb on + strand, within Rru_A1676 at 1966.466 kb on + strand, within Rru_A1676 at 1966.467 kb on - strand, within Rru_A1676 at 1966.898 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.345 kb on + strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.346 kb on - strand, within Rru_A1677 at 1967.472 kb on - strand, within Rru_A1677 at 1967.472 kb on - strand, within Rru_A1677 at 1967.490 kb on + strand, within Rru_A1677 at 1967.490 kb on + strand, within Rru_A1677 at 1967.551 kb on + strand, within Rru_A1677 at 1967.551 kb on + strand, within Rru_A1677 at 1967.561 kb on - strand, within Rru_A1677 at 1968.225 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.283 kb on + strand, within Rru_A1678 at 1968.383 kb on - strand, within Rru_A1678 at 1968.613 kb on + strand, within Rru_A1678 at 1968.614 kb on - strand, within Rru_A1678 at 1968.693 kb on + strand, within Rru_A1678 at 1968.727 kb on + strand, within Rru_A1678
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,965,645 + +1.4 1,965,645 + -0.1 1,965,646 - -1.7 1,966,092 + Rru_A1676 0.50 +0.1 1,966,092 + Rru_A1676 0.50 +0.5 1,966,092 + Rru_A1676 0.50 +0.4 1,966,092 + Rru_A1676 0.50 -0.1 1,966,092 + Rru_A1676 0.50 +0.7 1,966,092 + Rru_A1676 0.50 +0.7 1,966,092 + Rru_A1676 0.50 +1.1 1,966,092 + Rru_A1676 0.50 +0.7 1,966,092 + Rru_A1676 0.50 +1.4 1,966,092 + Rru_A1676 0.50 +1.6 1,966,093 - Rru_A1676 0.50 -2.5 1,966,093 - Rru_A1676 0.50 -0.1 1,966,093 - Rru_A1676 0.50 -0.1 1,966,093 - Rru_A1676 0.50 -0.1 1,966,394 + Rru_A1676 0.78 +0.6 1,966,394 + Rru_A1676 0.78 -0.1 1,966,412 + Rru_A1676 0.80 +1.9 1,966,412 + Rru_A1676 0.80 +1.1 1,966,423 - Rru_A1676 0.81 -1.7 1,966,464 + Rru_A1676 0.84 -0.2 1,966,464 + Rru_A1676 0.84 +0.3 1,966,464 + Rru_A1676 0.84 -1.1 1,966,465 - Rru_A1676 0.84 -0.1 1,966,465 - Rru_A1676 0.84 -0.1 1,966,466 + Rru_A1676 0.84 -0.1 1,966,466 + Rru_A1676 0.84 -1.1 1,966,467 - Rru_A1676 0.85 -0.1 1,966,898 + Rru_A1677 0.24 -0.1 1,967,345 + Rru_A1677 0.64 -0.1 1,967,345 + Rru_A1677 0.64 -0.1 1,967,345 + Rru_A1677 0.64 -1.1 1,967,345 + Rru_A1677 0.64 -0.1 1,967,346 - Rru_A1677 0.64 -0.1 1,967,346 - Rru_A1677 0.64 -0.1 1,967,346 - Rru_A1677 0.64 -1.5 1,967,346 - Rru_A1677 0.64 -0.1 1,967,346 - Rru_A1677 0.64 +1.9 1,967,472 - Rru_A1677 0.76 -0.1 1,967,472 - Rru_A1677 0.76 -1.1 1,967,490 + Rru_A1677 0.77 -0.1 1,967,490 + Rru_A1677 0.77 -0.1 1,967,551 + Rru_A1677 0.83 -0.1 1,967,551 + Rru_A1677 0.83 -0.1 1,967,561 - Rru_A1677 0.84 -1.7 1,968,225 + Rru_A1678 0.27 -2.1 1,968,283 + Rru_A1678 0.31 -0.1 1,968,283 + Rru_A1678 0.31 -0.1 1,968,283 + Rru_A1678 0.31 -0.1 1,968,283 + Rru_A1678 0.31 -1.5 1,968,383 - Rru_A1678 0.38 -0.1 1,968,613 + Rru_A1678 0.54 -1.1 1,968,614 - Rru_A1678 0.54 -0.1 1,968,693 + Rru_A1678 0.59 -3.0 1,968,727 + Rru_A1678 0.62 -2.5
Or see this region's nucleotide sequence