Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1493

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1492 and Rru_A1493 overlap by 4 nucleotidesRru_A1493 and Rru_A1494 are separated by 59 nucleotides Rru_A1492: Rru_A1492 - hypothetical protein (NCBI), at 1,761,769 to 1,763,175 _A1492 Rru_A1493: Rru_A1493 - UDP-N-acetylglucosamine 2-epimerase (NCBI), at 1,763,172 to 1,764,326 _A1493 Rru_A1494: Rru_A1494 - hypothetical protein (NCBI), at 1,764,386 to 1,765,768 _A1494 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -1 0 1 2at 1762.470 kb on - strand, within Rru_A1492at 1762.470 kb on - strand, within Rru_A1492at 1762.543 kb on + strand, within Rru_A1492at 1762.634 kb on + strand, within Rru_A1492at 1762.635 kb on - strand, within Rru_A1492at 1762.654 kb on + strand, within Rru_A1492at 1762.694 kb on + strand, within Rru_A1492at 1762.694 kb on + strand, within Rru_A1492at 1762.695 kb on - strand, within Rru_A1492at 1762.695 kb on - strand, within Rru_A1492at 1762.698 kb on + strand, within Rru_A1492at 1762.698 kb on + strand, within Rru_A1492at 1762.698 kb on + strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.699 kb on - strand, within Rru_A1492at 1762.703 kb on + strand, within Rru_A1492at 1762.703 kb on + strand, within Rru_A1492at 1762.703 kb on + strand, within Rru_A1492at 1762.703 kb on + strand, within Rru_A1492at 1762.704 kb on - strand, within Rru_A1492at 1762.704 kb on - strand, within Rru_A1492at 1762.704 kb on - strand, within Rru_A1492at 1762.796 kb on + strand, within Rru_A1492at 1762.797 kb on - strand, within Rru_A1492at 1762.948 kb on + strand, within Rru_A1492at 1763.482 kb on + strand, within Rru_A1493at 1763.482 kb on + strand, within Rru_A1493at 1763.483 kb on - strand, within Rru_A1493at 1763.483 kb on - strand, within Rru_A1493at 1764.315 kb on + strandat 1764.315 kb on + strandat 1764.316 kb on - strandat 1764.356 kb on + strandat 1764.356 kb on + strandat 1764.357 kb on - strandat 1764.357 kb on - strandat 1764.375 kb on - strandat 1764.399 kb on + strandat 1764.399 kb on + strandat 1764.521 kb on + strandat 1764.534 kb on + strand, within Rru_A1494at 1765.163 kb on + strand, within Rru_A1494at 1765.279 kb on + strand, within Rru_A1494at 1765.290 kb on - strand, within Rru_A1494

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,762,470 - Rru_A1492 0.50 -0.1
1,762,470 - Rru_A1492 0.50 +2.2
1,762,543 + Rru_A1492 0.55 +0.8
1,762,634 + Rru_A1492 0.61 -0.1
1,762,635 - Rru_A1492 0.62 +1.1
1,762,654 + Rru_A1492 0.63 -0.1
1,762,694 + Rru_A1492 0.66 -0.1
1,762,694 + Rru_A1492 0.66 +1.0
1,762,695 - Rru_A1492 0.66 +1.3
1,762,695 - Rru_A1492 0.66 +0.8
1,762,698 + Rru_A1492 0.66 +2.4
1,762,698 + Rru_A1492 0.66 +0.7
1,762,698 + Rru_A1492 0.66 -1.7
1,762,699 - Rru_A1492 0.66 +1.0
1,762,699 - Rru_A1492 0.66 +1.2
1,762,699 - Rru_A1492 0.66 +0.6
1,762,699 - Rru_A1492 0.66 +1.1
1,762,699 - Rru_A1492 0.66 +1.9
1,762,699 - Rru_A1492 0.66 +0.5
1,762,699 - Rru_A1492 0.66 +2.4
1,762,699 - Rru_A1492 0.66 -1.5
1,762,699 - Rru_A1492 0.66 +1.2
1,762,703 + Rru_A1492 0.66 -0.1
1,762,703 + Rru_A1492 0.66 +2.0
1,762,703 + Rru_A1492 0.66 +0.6
1,762,703 + Rru_A1492 0.66 +0.8
1,762,704 - Rru_A1492 0.66 +1.6
1,762,704 - Rru_A1492 0.66 -0.1
1,762,704 - Rru_A1492 0.66 +0.9
1,762,796 + Rru_A1492 0.73 +1.4
1,762,797 - Rru_A1492 0.73 +2.7
1,762,948 + Rru_A1492 0.84 +0.8
1,763,482 + Rru_A1493 0.27 -0.1
1,763,482 + Rru_A1493 0.27 -0.1
1,763,483 - Rru_A1493 0.27 +0.4
1,763,483 - Rru_A1493 0.27 -0.1
1,764,315 + +0.9
1,764,315 + -0.1
1,764,316 - +1.1
1,764,356 + +0.9
1,764,356 + -0.1
1,764,357 - +1.4
1,764,357 - -0.1
1,764,375 - +0.8
1,764,399 + +2.0
1,764,399 + +0.7
1,764,521 + -0.1
1,764,534 + Rru_A1494 0.11 -0.1
1,765,163 + Rru_A1494 0.56 -0.1
1,765,279 + Rru_A1494 0.65 +1.3
1,765,290 - Rru_A1494 0.65 +0.5

Or see this region's nucleotide sequence