Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1488

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,755,677	-		Rru_A1486	0.81	+0.8
1,755,677	-		Rru_A1486	0.81	+0.7
1,755,895	+				+0.8
1,755,944	+				-0.1
1,755,944	+				-1.1
1,755,945	-				+1.4
1,755,945	-				-0.1
1,755,946	+				+0.4
1,755,946	+				+1.3
1,755,946	+				+1.3
1,755,946	+				-1.7
1,755,946	+				-0.1
1,755,946	+				+0.7
1,755,946	+				-0.1
1,755,947	-				+1.4
1,755,947	-				+1.9
1,755,947	-				-0.1
1,755,947	-				+1.0
1,755,947	-				+0.4
1,755,947	-				+1.3
1,755,947	-				-0.1
1,755,947	-				+1.4
1,755,947	-				+1.4
1,755,947	-				-0.1
1,755,961	+		Rru_A1487	0.12	+2.3
1,755,961	+		Rru_A1487	0.12	+1.2
1,756,074	-		Rru_A1487	0.31	-0.1
1,756,075	+		Rru_A1487	0.31	+0.8
1,756,075	+		Rru_A1487	0.31	-1.1
1,756,075	+		Rru_A1487	0.31	+1.1
1,756,075	+		Rru_A1487	0.31	-0.1
1,756,076	-		Rru_A1487	0.31	-0.1
1,756,076	-		Rru_A1487	0.31	-0.1
1,756,076	-		Rru_A1487	0.31	+1.1
1,756,115	-		Rru_A1487	0.38	+1.0
1,756,162	-		Rru_A1487	0.46	+1.1
1,756,166	-		Rru_A1487	0.47	+1.2
1,756,166	-		Rru_A1487	0.47	+1.0
1,756,192	-		Rru_A1487	0.51	+1.4
1,756,498	-				+0.7
1,756,571	+				-1.1
1,756,571	+				+1.2
1,756,578	+				+1.0
1,756,578	+				-0.1
1,756,579	-				+0.6
1,756,579	-				+1.2
1,756,586	+				-0.1
1,756,650	+				+0.8
1,756,730	+		Rru_A1488	0.10	-0.1
1,756,745	-		Rru_A1488	0.12	+0.8
1,756,841	+		Rru_A1488	0.24	+0.7
1,756,853	+		Rru_A1488	0.26	-0.1
1,756,854	-		Rru_A1488	0.26	-0.1
1,756,854	-		Rru_A1488	0.26	-0.1
1,756,854	-		Rru_A1488	0.26	+0.5
1,756,854	-		Rru_A1488	0.26	-0.1
1,756,854	-		Rru_A1488	0.26	-1.7
1,756,943	-		Rru_A1488	0.37	-1.1
1,757,427	-				+1.2
1,757,427	-				+1.7
1,757,427	-				+0.7
1,757,432	+				+0.6
1,757,449	+				+0.5
1,757,450	-				+0.7
1,757,484	+				-0.1
1,757,512	+				+1.2
1,757,759	+		Rru_A1489	0.17	-0.1
1,757,759	+		Rru_A1489	0.17	-0.1
1,757,759	+		Rru_A1489	0.17	+1.3
1,757,759	+		Rru_A1489	0.17	+0.2
1,757,759	+		Rru_A1489	0.17	+0.8
1,757,760	-		Rru_A1489	0.17	+1.5
1,757,825	+		Rru_A1489	0.22	+1.4
1,757,825	+		Rru_A1489	0.22	+1.7
1,757,826	-		Rru_A1489	0.22	-0.1
1,757,827	+		Rru_A1489	0.22	+2.4
1,757,827	+		Rru_A1489	0.22	+1.3
1,757,828	-		Rru_A1489	0.22	-2.1
1,757,828	-		Rru_A1489	0.22	-0.1
1,757,828	-		Rru_A1489	0.22	+0.9
1,757,841	-		Rru_A1489	0.23	+1.2
1,757,841	-		Rru_A1489	0.23	-1.1
1,757,841	-		Rru_A1489	0.23	+1.2
1,757,841	-		Rru_A1489	0.23	-1.7
1,757,969	+		Rru_A1489	0.33	-0.1
1,757,969	+		Rru_A1489	0.33	+1.7
1,757,970	-		Rru_A1489	0.33	+0.6
1,758,017	+		Rru_A1489	0.36	-0.1
1,758,170	+		Rru_A1489	0.47	-0.1
1,758,171	-		Rru_A1489	0.47	+1.3
1,758,171	-		Rru_A1489	0.47	+1.5
1,758,171	-		Rru_A1489	0.47	+1.2
1,758,171	-		Rru_A1489	0.47	+1.2
1,758,172	+		Rru_A1489	0.47	-0.1
1,758,172	+		Rru_A1489	0.47	-0.1
1,758,173	-		Rru_A1489	0.48	-0.1
1,758,173	-		Rru_A1489	0.48	+0.0
1,758,173	-		Rru_A1489	0.48	+0.6
1,758,173	-		Rru_A1489	0.48	+1.5
1,758,272	+		Rru_A1489	0.55	-0.3
1,758,272	+		Rru_A1489	0.55	+1.9
1,758,273	-		Rru_A1489	0.55	-0.1
1,758,273	-		Rru_A1489	0.55	+1.8
1,758,273	-		Rru_A1489	0.55	-0.1
1,758,274	+		Rru_A1489	0.55	-1.1
1,758,274	+		Rru_A1489	0.55	+1.3
1,758,275	-		Rru_A1489	0.55	+2.0
1,758,275	-		Rru_A1489	0.55	-0.1
1,758,296	+		Rru_A1489	0.57	+1.2
1,758,297	-		Rru_A1489	0.57	+0.3
1,758,315	-		Rru_A1489	0.58	+0.4
1,758,315	-		Rru_A1489	0.58	+1.2
1,758,354	-		Rru_A1489	0.61	-0.1
1,758,364	+		Rru_A1489	0.62	+1.9
1,758,365	-		Rru_A1489	0.62	+2.4
1,758,367	+		Rru_A1489	0.62	-0.1
1,758,367	+		Rru_A1489	0.62	+0.6
1,758,368	-		Rru_A1489	0.62	+1.3
1,758,368	-		Rru_A1489	0.62	+0.9
1,758,368	-		Rru_A1489	0.62	+1.3
1,758,398	+		Rru_A1489	0.64	-0.1
1,758,399	-		Rru_A1489	0.64	+1.7
1,758,399	-		Rru_A1489	0.64	+1.3
1,758,400	+		Rru_A1489	0.64	+2.6
1,758,400	+		Rru_A1489	0.64	-0.1
1,758,401	-		Rru_A1489	0.64	+0.9
1,758,401	-		Rru_A1489	0.64	+1.5
1,758,428	-		Rru_A1489	0.66	+1.4