Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1475

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1474 and Rru_A1475 are separated by 58 nucleotidesRru_A1475 and Rru_A1476 are separated by 370 nucleotidesRru_A1476 and Rru_A1477 are separated by 233 nucleotides Rru_A1474: Rru_A1474 - Protein of unknown function DUF1446 (NCBI), at 1,739,321 to 1,740,658 _A1474 Rru_A1475: Rru_A1475 - Citrate transporter (NCBI), at 1,740,717 to 1,742,018 _A1475 Rru_A1476: Rru_A1476 - PhnA protein (NCBI), at 1,742,389 to 1,742,739 _A1476 Rru_A1477: Rru_A1477 - hypothetical protein (NCBI), at 1,742,973 to 1,743,713 _A1477 Position (kb) 1740 1741 1742 1743Strain fitness (log2 ratio) -1 0 1 2at 1739.841 kb on + strand, within Rru_A1474at 1739.842 kb on - strand, within Rru_A1474at 1739.865 kb on + strand, within Rru_A1474at 1739.866 kb on - strand, within Rru_A1474at 1740.018 kb on + strand, within Rru_A1474at 1740.019 kb on - strand, within Rru_A1474at 1740.216 kb on + strand, within Rru_A1474at 1740.216 kb on + strand, within Rru_A1474at 1740.489 kb on + strand, within Rru_A1474at 1740.489 kb on + strand, within Rru_A1474at 1740.489 kb on + strand, within Rru_A1474at 1740.490 kb on - strand, within Rru_A1474at 1740.490 kb on - strand, within Rru_A1474at 1740.624 kb on + strandat 1740.658 kb on + strandat 1740.658 kb on + strandat 1740.659 kb on - strandat 1740.665 kb on + strandat 1740.686 kb on + strandat 1740.718 kb on + strandat 1740.718 kb on + strandat 1740.718 kb on + strandat 1740.719 kb on - strandat 1740.719 kb on - strandat 1740.719 kb on - strandat 1740.781 kb on + strandat 1740.781 kb on + strandat 1740.782 kb on - strandat 1740.973 kb on + strand, within Rru_A1475at 1740.973 kb on + strand, within Rru_A1475at 1740.973 kb on + strand, within Rru_A1475at 1740.974 kb on - strand, within Rru_A1475at 1740.974 kb on - strand, within Rru_A1475at 1740.976 kb on + strand, within Rru_A1475at 1740.976 kb on + strand, within Rru_A1475at 1740.977 kb on - strand, within Rru_A1475at 1740.977 kb on - strand, within Rru_A1475at 1741.213 kb on + strand, within Rru_A1475at 1741.444 kb on + strand, within Rru_A1475at 1741.445 kb on - strand, within Rru_A1475at 1741.445 kb on - strand, within Rru_A1475at 1742.280 kb on + strandat 1742.357 kb on - strandat 1742.434 kb on + strand, within Rru_A1476at 1742.435 kb on - strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.829 kb on - strandat 1742.943 kb on + strandat 1742.943 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,739,841 + Rru_A1474 0.39 -0.1
1,739,842 - Rru_A1474 0.39 +0.8
1,739,865 + Rru_A1474 0.41 +0.4
1,739,866 - Rru_A1474 0.41 -0.1
1,740,018 + Rru_A1474 0.52 +1.0
1,740,019 - Rru_A1474 0.52 +0.4
1,740,216 + Rru_A1474 0.67 +1.3
1,740,216 + Rru_A1474 0.67 -0.1
1,740,489 + Rru_A1474 0.87 +2.7
1,740,489 + Rru_A1474 0.87 +2.0
1,740,489 + Rru_A1474 0.87 -0.1
1,740,490 - Rru_A1474 0.87 -0.1
1,740,490 - Rru_A1474 0.87 -0.1
1,740,624 + +1.5
1,740,658 + +0.7
1,740,658 + -0.1
1,740,659 - -0.1
1,740,665 + +1.0
1,740,686 + -0.1
1,740,718 + +0.4
1,740,718 + -0.1
1,740,718 + +0.3
1,740,719 - +0.0
1,740,719 - +2.2
1,740,719 - -0.1
1,740,781 + +1.7
1,740,781 + +0.9
1,740,782 - -0.1
1,740,973 + Rru_A1475 0.20 -0.1
1,740,973 + Rru_A1475 0.20 -0.1
1,740,973 + Rru_A1475 0.20 -0.1
1,740,974 - Rru_A1475 0.20 +0.9
1,740,974 - Rru_A1475 0.20 -0.3
1,740,976 + Rru_A1475 0.20 -1.1
1,740,976 + Rru_A1475 0.20 +0.9
1,740,977 - Rru_A1475 0.20 -0.1
1,740,977 - Rru_A1475 0.20 -0.1
1,741,213 + Rru_A1475 0.38 +0.2
1,741,444 + Rru_A1475 0.56 +1.0
1,741,445 - Rru_A1475 0.56 +0.1
1,741,445 - Rru_A1475 0.56 +1.5
1,742,280 + +1.9
1,742,357 - +0.6
1,742,434 + Rru_A1476 0.13 +1.1
1,742,435 - Rru_A1476 0.13 +1.1
1,742,670 + Rru_A1476 0.80 -0.1
1,742,670 + Rru_A1476 0.80 +1.1
1,742,670 + Rru_A1476 0.80 +0.4
1,742,670 + Rru_A1476 0.80 -0.1
1,742,670 + Rru_A1476 0.80 +0.8
1,742,670 + Rru_A1476 0.80 +1.0
1,742,671 - Rru_A1476 0.80 +0.9
1,742,671 - Rru_A1476 0.80 +0.9
1,742,671 - Rru_A1476 0.80 -1.1
1,742,671 - Rru_A1476 0.80 +0.9
1,742,829 - +0.6
1,742,943 + +0.6
1,742,943 + +1.4

Or see this region's nucleotide sequence