Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1420

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,677,088	-		Rru_A1419	0.60	+0.6
1,677,088	-		Rru_A1419	0.60	-0.1
1,677,115	+		Rru_A1419	0.62	+0.9
1,677,116	-		Rru_A1419	0.62	-0.1
1,677,116	-		Rru_A1419	0.62	+1.3
1,677,220	-		Rru_A1419	0.70	+1.1
1,677,266	+		Rru_A1419	0.73	+1.6
1,677,266	+		Rru_A1419	0.73	-0.1
1,677,266	+		Rru_A1419	0.73	-0.4
1,677,267	-		Rru_A1419	0.73	-0.1
1,677,426	+		Rru_A1419	0.85	+0.7
1,677,426	+		Rru_A1419	0.85	+1.6
1,677,427	-		Rru_A1419	0.85	+0.8
1,677,427	-		Rru_A1419	0.85	+1.0
1,677,640	+				-0.1
1,677,640	+				+1.4
1,677,640	+				-0.2
1,677,641	-				+1.0
1,677,686	-				-0.1
1,677,702	+				-0.1
1,677,703	-				+0.8
1,677,816	-				-0.1
1,677,885	+				+0.9
1,677,885	+				+0.4
1,677,886	-				+1.6
1,677,887	+				-0.1
1,677,887	+				-0.1
1,677,887	+				-0.1
1,677,925	-				+1.9
1,677,979	+				-0.1
1,677,980	-				+1.1
1,677,980	-				+1.9
1,677,980	-				-1.1
1,677,980	-				+1.5
1,677,980	-				-0.1
1,678,004	-				+1.2
1,678,134	+				-0.6
1,678,264	+		Rru_A1420	0.10	+1.2
1,678,264	+		Rru_A1420	0.10	-0.1
1,678,264	+		Rru_A1420	0.10	-0.1
1,678,265	-		Rru_A1420	0.10	+1.4
1,678,265	-		Rru_A1420	0.10	+0.9
1,678,286	-		Rru_A1420	0.11	+1.3
1,678,336	+		Rru_A1420	0.12	+1.7
1,678,336	+		Rru_A1420	0.12	+1.1
1,678,337	-		Rru_A1420	0.12	-1.7
1,678,337	-		Rru_A1420	0.12	-0.1
1,678,339	+		Rru_A1420	0.12	+2.3
1,678,339	+		Rru_A1420	0.12	+0.7
1,678,340	-		Rru_A1420	0.12	-0.6
1,678,340	-		Rru_A1420	0.12	+0.4
1,678,680	-		Rru_A1420	0.21	+1.2
1,678,762	+		Rru_A1420	0.23	-1.7
1,678,763	-		Rru_A1420	0.23	-0.1
1,678,763	-		Rru_A1420	0.23	+3.0
1,678,763	-		Rru_A1420	0.23	+0.9
1,678,774	+		Rru_A1420	0.24	+0.6
1,678,775	-		Rru_A1420	0.24	+0.5
1,678,775	-		Rru_A1420	0.24	-0.1
1,678,775	-		Rru_A1420	0.24	+2.4
1,678,775	-		Rru_A1420	0.24	+0.1
1,678,804	+		Rru_A1420	0.24	+2.5
1,678,876	+		Rru_A1420	0.26	+0.1
1,678,876	+		Rru_A1420	0.26	+0.7
1,678,876	+		Rru_A1420	0.26	-0.1
1,678,877	-		Rru_A1420	0.26	-0.1
1,678,877	-		Rru_A1420	0.26	+1.2
1,678,909	+		Rru_A1420	0.27	-0.1
1,678,910	-		Rru_A1420	0.27	-0.1
1,678,910	-		Rru_A1420	0.27	+0.7
1,678,963	+		Rru_A1420	0.29	+2.0
1,678,963	+		Rru_A1420	0.29	+1.2
1,678,963	+		Rru_A1420	0.29	+0.5
1,678,964	-		Rru_A1420	0.29	+1.3
1,678,990	+		Rru_A1420	0.29	+1.2
1,678,991	-		Rru_A1420	0.29	+0.7
1,678,991	-		Rru_A1420	0.29	+0.5
1,678,991	-		Rru_A1420	0.29	+2.2
1,679,152	+		Rru_A1420	0.34	+1.4
1,679,153	-		Rru_A1420	0.34	+0.6
1,679,154	+		Rru_A1420	0.34	+0.9
1,679,154	+		Rru_A1420	0.34	-0.1
1,679,154	+		Rru_A1420	0.34	-0.1
1,679,154	+		Rru_A1420	0.34	+1.1
1,679,154	+		Rru_A1420	0.34	+1.0
1,679,155	-		Rru_A1420	0.34	-0.1
1,679,155	-		Rru_A1420	0.34	-0.1
1,679,155	-		Rru_A1420	0.34	-0.1
1,679,155	-		Rru_A1420	0.34	-1.1
1,679,155	-		Rru_A1420	0.34	-0.1
1,679,155	-		Rru_A1420	0.34	+0.1
1,679,155	-		Rru_A1420	0.34	+0.6
1,679,695	+		Rru_A1420	0.48	+0.3
1,679,695	+		Rru_A1420	0.48	+0.3
1,679,695	+		Rru_A1420	0.48	+0.5
1,679,695	+		Rru_A1420	0.48	+1.0
1,679,695	+		Rru_A1420	0.48	+0.9
1,679,695	+		Rru_A1420	0.48	+1.1
1,679,695	+		Rru_A1420	0.48	+0.9
1,679,695	+		Rru_A1420	0.48	-1.7
1,679,695	+		Rru_A1420	0.48	-0.1
1,679,696	-		Rru_A1420	0.48	-0.1
1,679,696	-		Rru_A1420	0.48	+1.1
1,679,696	-		Rru_A1420	0.48	+0.7
1,679,767	+		Rru_A1420	0.50	+1.1
1,679,771	-		Rru_A1420	0.50	+1.1
1,679,771	-		Rru_A1420	0.50	-0.1
1,679,806	+		Rru_A1420	0.51	+1.1
1,679,806	+		Rru_A1420	0.51	+0.9
1,679,807	-		Rru_A1420	0.51	-0.1
1,679,807	-		Rru_A1420	0.51	-0.1
1,679,809	-		Rru_A1420	0.51	+1.2
1,680,037	+		Rru_A1420	0.57	+0.6
1,680,037	+		Rru_A1420	0.57	+0.7
1,680,037	+		Rru_A1420	0.57	-0.1
1,680,037	+		Rru_A1420	0.57	-0.1
1,680,037	+		Rru_A1420	0.57	+1.3
1,680,037	+		Rru_A1420	0.57	+1.1
1,680,037	+		Rru_A1420	0.57	+1.0
1,680,038	-		Rru_A1420	0.57	+1.2
1,680,039	+		Rru_A1420	0.57	-0.1
1,680,039	+		Rru_A1420	0.57	-0.1
1,680,040	-		Rru_A1420	0.57	-0.1
1,680,040	-		Rru_A1420	0.57	+1.0
1,680,040	-		Rru_A1420	0.57	+0.7
1,680,040	-		Rru_A1420	0.57	+1.5
1,680,133	+		Rru_A1420	0.59	+0.7
1,680,133	+		Rru_A1420	0.59	+1.7
1,680,133	+		Rru_A1420	0.59	-0.1
1,680,134	-		Rru_A1420	0.59	-0.1
1,680,196	+		Rru_A1420	0.61	+0.6
1,680,208	+		Rru_A1420	0.61	+1.3
1,680,208	+		Rru_A1420	0.61	+1.2
1,680,209	-		Rru_A1420	0.61	-0.1
1,680,209	-		Rru_A1420	0.61	+0.5
1,680,210	+		Rru_A1420	0.61	+1.3
1,680,211	-		Rru_A1420	0.61	+1.1
1,680,412	-		Rru_A1420	0.67	+1.2
1,680,598	+		Rru_A1420	0.72	-0.1
1,680,640	+		Rru_A1420	0.73	-0.1
1,680,640	+		Rru_A1420	0.73	+1.3
1,680,640	+		Rru_A1420	0.73	+0.6
1,680,640	+		Rru_A1420	0.73	+0.3
1,680,642	+		Rru_A1420	0.73	+0.8
1,680,642	+		Rru_A1420	0.73	-0.1
1,680,642	+		Rru_A1420	0.73	-0.1
1,680,642	+		Rru_A1420	0.73	-0.1
1,680,643	-		Rru_A1420	0.73	+0.6
1,680,643	-		Rru_A1420	0.73	-0.4
1,680,689	+		Rru_A1420	0.74	+0.5
1,680,690	-		Rru_A1420	0.74	+1.3
1,680,850	+		Rru_A1420	0.78	+1.8
1,680,874	+		Rru_A1420	0.79	+0.9
1,680,875	-		Rru_A1420	0.79	-0.1
1,680,875	-		Rru_A1420	0.79	-0.5
1,680,960	+		Rru_A1420	0.81	+1.2
1,680,961	-		Rru_A1420	0.81	-0.1
1,680,961	-		Rru_A1420	0.81	-1.1
1,680,961	-		Rru_A1420	0.81	-0.1
1,681,132	+		Rru_A1420	0.86	+1.1
1,681,133	-		Rru_A1420	0.86	-0.1
1,681,133	-		Rru_A1420	0.86	+0.8
1,681,133	-		Rru_A1420	0.86	-2.1
1,681,159	+		Rru_A1420	0.86	-0.1
1,681,498	+				-0.1
1,681,542	+				+0.4
1,681,542	+				+0.4
1,681,542	+				-1.1
1,681,542	+				+1.0
1,681,542	+				+0.9
1,681,543	-				+1.0
1,681,543	-				-0.1
1,681,543	-				+0.8
1,681,543	-				-1.4
1,681,543	-				+0.9
1,681,600	+				+0.5
1,681,600	+				-0.7
1,681,601	-				-0.1
1,681,675	+				-0.1
1,681,676	-				-0.1
1,681,829	+		Rru_A1421	0.17	-0.1
1,681,830	-		Rru_A1421	0.17	-0.1
1,681,830	-		Rru_A1421	0.17	+1.1
1,681,863	+		Rru_A1421	0.20	+1.5
1,681,863	+		Rru_A1421	0.20	+0.7
1,681,864	-		Rru_A1421	0.20	-0.1
1,681,965	-		Rru_A1421	0.31	-0.1
1,682,111	+		Rru_A1421	0.46	+0.5
1,682,112	-		Rru_A1421	0.46	+1.1
1,682,231	+		Rru_A1421	0.58	-0.1
1,682,231	+		Rru_A1421	0.58	+1.0
1,682,232	-		Rru_A1421	0.58	-1.1
1,682,232	-		Rru_A1421	0.58	+1.0
1,682,232	-		Rru_A1421	0.58	-0.1
1,682,270	+		Rru_A1421	0.62	+1.0
1,682,270	+		Rru_A1421	0.62	+0.6
1,682,270	+		Rru_A1421	0.62	-0.1
1,682,270	+		Rru_A1421	0.62	-0.1
1,682,271	-		Rru_A1421	0.62	+1.3
1,682,271	-		Rru_A1421	0.62	+0.7
1,682,271	-		Rru_A1421	0.62	+0.7
1,682,271	-		Rru_A1421	0.62	+0.8
1,682,315	-		Rru_A1421	0.67	-0.1
1,682,360	+		Rru_A1421	0.71	+1.8
1,682,361	-		Rru_A1421	0.71	-0.1
1,682,577	-				-0.1
1,682,577	-				+0.2
1,682,668	+				-0.1
1,682,668	+				+0.5
1,682,669	-				+1.7