Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1409

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,663,426	-		Rru_A1408	0.66	+0.8
1,663,441	+		Rru_A1408	0.67	-0.1
1,663,441	+		Rru_A1408	0.67	-0.1
1,663,441	+		Rru_A1408	0.67	+1.2
1,663,441	+		Rru_A1408	0.67	+0.9
1,663,442	-		Rru_A1408	0.67	+0.2
1,663,442	-		Rru_A1408	0.67	-0.1
1,663,442	-		Rru_A1408	0.67	+0.9
1,663,505	+		Rru_A1408	0.71	+1.1
1,663,506	-		Rru_A1408	0.71	-0.1
1,663,506	-		Rru_A1408	0.71	-0.1
1,663,506	-		Rru_A1408	0.71	+1.2
1,663,875	-				+1.0
1,664,048	+				+1.1
1,664,113	+				+2.0
1,664,119	+				-0.7
1,664,141	+				+0.1
1,664,236	+				-0.1
1,664,236	+				+0.5
1,664,237	-				+1.1
1,664,608	+		Rru_A1409	0.24	+1.5
1,664,609	-		Rru_A1409	0.24	-0.1
1,664,609	-		Rru_A1409	0.24	+1.0
1,664,609	-		Rru_A1409	0.24	-0.1
1,664,638	+		Rru_A1409	0.26	-0.1
1,664,638	+		Rru_A1409	0.26	-1.1
1,664,638	+		Rru_A1409	0.26	+1.6
1,664,639	-		Rru_A1409	0.26	+1.0
1,664,639	-		Rru_A1409	0.26	-0.1
1,664,639	-		Rru_A1409	0.26	-0.1
1,664,774	+		Rru_A1409	0.34	+1.3
1,664,774	+		Rru_A1409	0.34	-0.1
1,664,774	+		Rru_A1409	0.34	+1.0
1,664,775	-		Rru_A1409	0.34	+1.5
1,664,776	+		Rru_A1409	0.34	+0.9
1,664,776	+		Rru_A1409	0.34	+0.9
1,664,776	+		Rru_A1409	0.34	-0.1
1,664,777	-		Rru_A1409	0.34	+0.9
1,664,835	-		Rru_A1409	0.38	-0.1
1,664,986	+		Rru_A1409	0.47	-0.1
1,664,986	+		Rru_A1409	0.47	+1.9
1,664,986	+		Rru_A1409	0.47	+1.3
1,664,986	+		Rru_A1409	0.47	-0.1
1,664,987	-		Rru_A1409	0.47	+1.4
1,665,035	+		Rru_A1409	0.50	+1.7
1,665,035	+		Rru_A1409	0.50	+0.9
1,665,035	+		Rru_A1409	0.50	-0.1
1,665,036	-		Rru_A1409	0.50	-0.1
1,665,052	+		Rru_A1409	0.51	+1.7
1,665,052	+		Rru_A1409	0.51	-0.1
1,665,053	-		Rru_A1409	0.51	+1.4
1,665,053	-		Rru_A1409	0.51	+1.2
1,665,124	+		Rru_A1409	0.56	+1.3
1,665,124	+		Rru_A1409	0.56	+2.2
1,665,124	+		Rru_A1409	0.56	+0.4
1,665,124	+		Rru_A1409	0.56	+0.6
1,665,125	-		Rru_A1409	0.56	+1.5
1,665,125	-		Rru_A1409	0.56	-0.1
1,665,125	-		Rru_A1409	0.56	+0.6
1,665,125	-		Rru_A1409	0.56	+1.1
1,665,294	-		Rru_A1409	0.66	+2.5
1,665,363	-		Rru_A1409	0.70	+1.2
1,665,391	+		Rru_A1409	0.72	+2.3
1,665,507	+		Rru_A1409	0.79	+0.8
1,665,508	-		Rru_A1409	0.79	-0.1
1,665,581	+		Rru_A1409	0.83	+2.1
1,665,582	-		Rru_A1409	0.83	-0.1
1,665,582	-		Rru_A1409	0.83	+0.8
1,665,582	-		Rru_A1409	0.83	-0.1
1,665,583	+		Rru_A1409	0.83	-0.1
1,665,584	-		Rru_A1409	0.84	+1.2
1,665,584	-		Rru_A1409	0.84	-0.1
1,665,682	+		Rru_A1409	0.89	-0.1
1,665,682	+		Rru_A1409	0.89	+1.3
1,665,746	+				-0.1
1,666,037	+				-0.1
1,666,037	+				+1.1
1,666,038	-				-1.3
1,666,038	-				-1.0
1,666,514	+		Rru_A1410	0.21	-0.1
1,666,514	+		Rru_A1410	0.21	-0.1
1,666,515	-		Rru_A1410	0.21	-0.1
1,666,628	+		Rru_A1410	0.25	-0.1
1,666,629	-		Rru_A1410	0.25	-0.1
1,666,629	-		Rru_A1410	0.25	+1.0