Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1391

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,641,533	+		Rru_A1389	0.57	+0.9
1,641,534	-		Rru_A1389	0.57	+1.2
1,641,599	+		Rru_A1389	0.64	+1.3
1,641,599	+		Rru_A1389	0.64	-0.1
1,641,600	-		Rru_A1389	0.64	-0.1
1,641,600	-		Rru_A1389	0.64	-0.1
1,641,606	-		Rru_A1389	0.65	+1.4
1,641,662	+		Rru_A1389	0.71	+0.3
1,641,740	-		Rru_A1389	0.80	+1.2
1,641,740	-		Rru_A1389	0.80	-0.1
1,641,900	-				+0.9
1,641,923	+				+1.7
1,641,924	-				+1.1
1,641,924	-				+1.1
1,642,034	+		Rru_A1390	0.20	-0.4
1,642,035	-		Rru_A1390	0.20	-1.7
1,642,035	-		Rru_A1390	0.20	+0.9
1,642,035	-		Rru_A1390	0.20	+0.9
1,642,035	-		Rru_A1390	0.20	+1.6
1,642,086	-		Rru_A1390	0.29	+0.6
1,642,131	-		Rru_A1390	0.37	+1.0
1,642,191	-		Rru_A1390	0.48	+1.6
1,642,227	+		Rru_A1390	0.55	+1.0
1,642,227	+		Rru_A1390	0.55	-0.1
1,642,227	+		Rru_A1390	0.55	+1.9
1,642,228	-		Rru_A1390	0.55	+1.1
1,642,228	-		Rru_A1390	0.55	+1.3
1,642,260	+		Rru_A1390	0.61	+1.6
1,642,260	+		Rru_A1390	0.61	+0.1
1,642,260	+		Rru_A1390	0.61	+1.1
1,642,261	-		Rru_A1390	0.61	+0.3
1,642,261	-		Rru_A1390	0.61	-0.1
1,642,261	-		Rru_A1390	0.61	-1.1
1,642,262	+		Rru_A1390	0.61	+1.0
1,642,263	-		Rru_A1390	0.61	+0.5
1,642,263	-		Rru_A1390	0.61	+1.5
1,642,263	-		Rru_A1390	0.61	+1.4
1,642,263	-		Rru_A1390	0.61	-0.1
1,642,263	-		Rru_A1390	0.61	+1.4
1,642,436	+				+1.8
1,642,437	-				-1.1
1,642,437	-				-0.1
1,642,445	+				-0.1
1,642,445	+				+0.6
1,642,966	+		Rru_A1391	0.68	-0.1
1,642,966	+		Rru_A1391	0.68	+0.8
1,642,966	+		Rru_A1391	0.68	-0.1
1,643,324	+				+0.6
1,643,325	-				-0.1
1,643,325	-				+1.5
1,643,347	-				+0.4
1,643,423	+				+1.4
1,643,423	+				-0.1
1,643,423	+				+1.5
1,643,424	-				-0.1
1,643,424	-				-0.1
1,643,424	-				-0.1
1,643,424	-				-0.1
1,643,574	+		Rru_A1392	0.21	+1.2
1,643,575	-		Rru_A1392	0.21	+0.9
1,643,625	-		Rru_A1392	0.24	+1.1
1,643,625	-		Rru_A1392	0.24	+1.0
1,643,720	+		Rru_A1392	0.31	-0.1
1,643,720	+		Rru_A1392	0.31	-1.1
1,643,720	+		Rru_A1392	0.31	+0.6
1,643,720	+		Rru_A1392	0.31	+0.8
1,643,720	+		Rru_A1392	0.31	-0.4
1,643,751	+		Rru_A1392	0.33	-0.1
1,643,751	+		Rru_A1392	0.33	+1.0
1,643,751	+		Rru_A1392	0.33	+0.8