Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1316

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,551,652	-		Rru_A1314	0.51	-0.1
1,551,735	-		Rru_A1314	0.64	+1.1
1,551,985	+				+0.9
1,552,095	+		Rru_A1315	0.37	-0.1
1,552,095	+		Rru_A1315	0.37	+1.1
1,552,095	+		Rru_A1315	0.37	+0.6
1,552,095	+		Rru_A1315	0.37	+1.2
1,552,095	+		Rru_A1315	0.37	-0.1
1,552,096	-		Rru_A1315	0.37	+1.4
1,552,096	-		Rru_A1315	0.37	-0.1
1,552,096	-		Rru_A1315	0.37	+1.2
1,552,096	-		Rru_A1315	0.37	+1.3
1,552,096	-		Rru_A1315	0.37	+0.8
1,552,315	+				+1.1
1,552,315	+				+0.6
1,552,316	-				+1.7
1,552,335	+				-0.1
1,552,337	+				-0.1
1,552,338	-				-0.1
1,552,342	+				-0.1
1,552,348	+				-0.1
1,552,379	+				-0.1
1,552,426	+				+1.7
1,552,456	-				-0.1
1,552,468	+				+1.5
1,552,534	+				-0.1
1,552,534	+				-0.1
1,552,535	-				+0.9
1,552,597	+				+1.7
1,552,597	+				+0.9
1,552,597	+				+1.5
1,552,597	+				+0.8
1,552,598	-				-1.1
1,552,598	-				+1.1
1,552,604	+				+1.0
1,552,843	+		Rru_A1316	0.15	+3.2
1,552,843	+		Rru_A1316	0.15	+1.1
1,552,843	+		Rru_A1316	0.15	+1.9
1,552,843	+		Rru_A1316	0.15	+0.5
1,552,844	-		Rru_A1316	0.15	-0.1
1,552,844	-		Rru_A1316	0.15	+1.8
1,552,844	-		Rru_A1316	0.15	+0.9
1,552,846	+		Rru_A1316	0.15	+1.1
1,552,847	-		Rru_A1316	0.15	-0.1
1,552,847	-		Rru_A1316	0.15	-0.1
1,552,847	-		Rru_A1316	0.15	+1.0
1,552,918	-		Rru_A1316	0.19	+1.9
1,553,074	+		Rru_A1316	0.29	+0.5
1,553,085	-		Rru_A1316	0.30	+1.2
1,553,085	-		Rru_A1316	0.30	+1.3
1,553,085	-		Rru_A1316	0.30	+0.9
1,553,155	+		Rru_A1316	0.34	+1.7
1,553,155	+		Rru_A1316	0.34	+1.3
1,553,155	+		Rru_A1316	0.34	+0.7
1,553,155	+		Rru_A1316	0.34	+1.0
1,553,155	+		Rru_A1316	0.34	+1.2
1,553,156	-		Rru_A1316	0.34	+0.9
1,553,156	-		Rru_A1316	0.34	-0.1
1,553,156	-		Rru_A1316	0.34	+2.1
1,553,156	-		Rru_A1316	0.34	+1.5
1,553,156	-		Rru_A1316	0.34	+1.3
1,553,195	-		Rru_A1316	0.36	+2.1
1,553,195	-		Rru_A1316	0.36	-0.1
1,553,195	-		Rru_A1316	0.36	-0.1
1,553,268	+		Rru_A1316	0.41	+1.0
1,553,268	+		Rru_A1316	0.41	+0.7
1,553,798	-		Rru_A1316	0.73	+0.9
1,553,798	-		Rru_A1316	0.73	-0.1
1,554,203	-				+0.8
1,554,203	-				-0.1
1,554,203	-				-0.1
1,554,243	+				+1.3
1,554,244	-				-0.1
1,554,251	+				+1.0
1,554,252	-				-1.1
1,554,262	-				+0.7
1,554,669	+		Rru_A1317	0.20	+0.6
1,554,669	+		Rru_A1317	0.20	-0.1
1,554,669	+		Rru_A1317	0.20	+0.9
1,554,669	+		Rru_A1317	0.20	+1.2
1,554,669	+		Rru_A1317	0.20	-0.1
1,554,670	-		Rru_A1317	0.20	+1.5
1,554,670	-		Rru_A1317	0.20	-0.1
1,554,670	-		Rru_A1317	0.20	-0.1
1,554,670	-		Rru_A1317	0.20	+0.6
1,554,670	-		Rru_A1317	0.20	-0.1
1,554,670	-		Rru_A1317	0.20	+1.8
1,554,670	-		Rru_A1317	0.20	-0.1
1,554,670	-		Rru_A1317	0.20	+1.4
1,554,670	-		Rru_A1317	0.20	-0.1
1,554,768	+		Rru_A1317	0.26	+1.8
1,554,769	-		Rru_A1317	0.26	-0.1
1,554,769	-		Rru_A1317	0.26	-0.1
1,554,769	-		Rru_A1317	0.26	+0.8
1,554,966	+		Rru_A1317	0.38	-0.1
1,554,967	-		Rru_A1317	0.38	-0.6
1,554,967	-		Rru_A1317	0.38	+1.5
1,555,061	+		Rru_A1317	0.44	+1.1
1,555,061	+		Rru_A1317	0.44	-0.1
1,555,065	+		Rru_A1317	0.44	+2.5
1,555,065	+		Rru_A1317	0.44	+0.8
1,555,065	+		Rru_A1317	0.44	-0.1
1,555,065	+		Rru_A1317	0.44	+1.6
1,555,065	+		Rru_A1317	0.44	+1.2
1,555,066	-		Rru_A1317	0.44	-0.1
1,555,066	-		Rru_A1317	0.44	+1.9
1,555,066	-		Rru_A1317	0.44	+1.1
1,555,084	-		Rru_A1317	0.45	+1.1
1,555,084	-		Rru_A1317	0.45	+1.2
1,555,084	-		Rru_A1317	0.45	-0.1
1,555,116	+		Rru_A1317	0.47	-0.1
1,555,117	-		Rru_A1317	0.47	+1.2
1,555,117	-		Rru_A1317	0.47	+0.8
1,555,134	+		Rru_A1317	0.49	-0.1
1,555,146	+		Rru_A1317	0.49	+1.5
1,555,147	-		Rru_A1317	0.49	+1.6
1,555,230	+		Rru_A1317	0.54	-0.1
1,555,230	+		Rru_A1317	0.54	-0.1