Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1231

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,451,711	+		Rru_A1229	0.73	+0.8
1,451,711	+		Rru_A1229	0.73	+1.2
1,451,711	+		Rru_A1229	0.73	+1.2
1,451,711	+		Rru_A1229	0.73	+0.9
1,451,711	+		Rru_A1229	0.73	-1.2
1,451,711	+		Rru_A1229	0.73	-0.1
1,451,712	-		Rru_A1229	0.73	-0.1
1,451,712	-		Rru_A1229	0.73	-0.1
1,451,712	-		Rru_A1229	0.73	+1.0
1,451,712	-		Rru_A1229	0.73	-0.1
1,451,846	+		Rru_A1229	0.83	+2.6
1,451,846	+		Rru_A1229	0.83	-0.1
1,451,846	+		Rru_A1229	0.83	+0.6
1,451,847	-		Rru_A1229	0.83	+1.7
1,451,847	-		Rru_A1229	0.83	-0.1
1,451,911	-		Rru_A1229	0.88	-0.1
1,451,912	+		Rru_A1229	0.88	+1.8
1,451,912	+		Rru_A1229	0.88	-0.1
1,451,912	+		Rru_A1229	0.88	-2.7
1,451,913	-		Rru_A1229	0.88	-0.1
1,451,913	-		Rru_A1229	0.88	+0.7
1,452,073	-				+0.6
1,452,138	+				-0.1
1,452,138	+				-0.1
1,452,138	+				+0.3
1,452,138	+				+0.8
1,452,139	-				+1.3
1,452,139	-				+1.5
1,452,139	-				-0.1
1,452,420	+		Rru_A1230	0.50	+0.3
1,452,764	+				+0.3
1,452,764	+				+2.3
1,452,803	+				+0.8
1,452,833	+				-0.1
1,452,834	-				+1.9
1,452,894	+		Rru_A1231	0.13	+1.2
1,452,895	-		Rru_A1231	0.13	+1.4
1,452,895	-		Rru_A1231	0.13	+1.5
1,452,956	+		Rru_A1231	0.17	-0.1
1,452,956	+		Rru_A1231	0.17	+1.6
1,452,956	+		Rru_A1231	0.17	+1.1
1,452,957	-		Rru_A1231	0.17	+1.1
1,452,957	-		Rru_A1231	0.17	-0.1
1,452,957	-		Rru_A1231	0.17	+1.4
1,453,052	+		Rru_A1231	0.22	+1.7
1,453,373	+		Rru_A1231	0.41	-0.1
1,453,374	-		Rru_A1231	0.41	+0.5
1,453,374	-		Rru_A1231	0.41	-0.1
1,453,485	+		Rru_A1231	0.47	-0.1
1,453,508	+		Rru_A1231	0.48	-0.1
1,453,509	-		Rru_A1231	0.48	+1.2
1,453,509	-		Rru_A1231	0.48	-0.1
1,454,132	+		Rru_A1231	0.84	+1.7
1,454,133	-		Rru_A1231	0.84	-0.1
1,454,133	-		Rru_A1231	0.84	+2.3
1,454,133	-		Rru_A1231	0.84	+1.2
1,454,133	-		Rru_A1231	0.84	-0.1
1,454,135	+		Rru_A1231	0.84	+1.0
1,454,136	-		Rru_A1231	0.84	+1.9
1,454,239	+				+1.5
1,454,448	+				+0.4
1,454,448	+				+1.0
1,454,448	+				+1.4
1,454,449	-				-0.1
1,454,449	-				-0.1
1,454,449	-				-0.1
1,454,449	-				+1.0
1,454,449	-				-0.1
1,455,178	-		Rru_A1232	0.55	-0.1