Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1181

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1180 and Rru_A1181 are separated by 99 nucleotidesRru_A1181 and Rru_A1182 overlap by 4 nucleotides Rru_A1180: Rru_A1180 - Major facilitator superfamily MFS_1 (NCBI), at 1,396,753 to 1,397,934 _A1180 Rru_A1181: Rru_A1181 - Cell division transporter substrate-binding protein FtsY (NCBI), at 1,398,034 to 1,399,554 _A1181 Rru_A1182: Rru_A1182 - MiaB-like tRNA modifying enzyme (NCBI), at 1,399,551 to 1,400,876 _A1182 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -1 0 1 2at 1397.694 kb on + strand, within Rru_A1180at 1397.695 kb on - strand, within Rru_A1180at 1397.695 kb on - strand, within Rru_A1180at 1397.695 kb on - strand, within Rru_A1180at 1397.695 kb on - strand, within Rru_A1180at 1397.780 kb on - strand, within Rru_A1180at 1397.932 kb on + strandat 1397.933 kb on - strandat 1397.933 kb on - strandat 1398.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,397,694 + Rru_A1180 0.80 -1.7
1,397,695 - Rru_A1180 0.80 -0.1
1,397,695 - Rru_A1180 0.80 -0.1
1,397,695 - Rru_A1180 0.80 +0.9
1,397,695 - Rru_A1180 0.80 -0.2
1,397,780 - Rru_A1180 0.87 -1.1
1,397,932 + +0.9
1,397,933 - +1.4
1,397,933 - +0.5
1,398,036 - +2.1

Or see this region's nucleotide sequence