Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1173

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,388,288	+				-0.1
1,388,331	-				-0.1
1,388,331	-				-2.4
1,388,369	-				-0.1
1,388,369	-				-0.1
1,388,515	+		Rru_A1171	0.42	-0.1
1,388,516	-		Rru_A1171	0.43	-0.1
1,388,761	+				+0.8
1,388,761	+				+1.7
1,388,761	+				+0.3
1,388,762	-				-0.1
1,388,762	-				+0.3
1,388,762	-				+0.9
1,388,762	-				-0.1
1,388,764	+				+1.3
1,388,764	+				-0.1
1,388,764	+				+0.3
1,388,764	+				+0.2
1,388,764	+				+0.7
1,388,765	-				+1.2
1,388,765	-				-0.2
1,388,923	+		Rru_A1172	0.32	+1.8
1,388,923	+		Rru_A1172	0.32	+1.5
1,388,923	+		Rru_A1172	0.32	-0.1
1,388,923	+		Rru_A1172	0.32	+1.7
1,388,924	-		Rru_A1172	0.32	-0.1
1,388,924	-		Rru_A1172	0.32	+0.2
1,388,924	-		Rru_A1172	0.32	+0.1
1,389,209	+				-0.1
1,389,714	+		Rru_A1173	0.36	-0.1
1,389,715	-		Rru_A1173	0.36	-0.1
1,389,922	-		Rru_A1173	0.52	+1.1
1,389,922	-		Rru_A1173	0.52	-0.5
1,390,062	+		Rru_A1173	0.62	+0.8
1,390,063	-		Rru_A1173	0.62	+1.2
1,390,105	+		Rru_A1173	0.65	+0.8
1,390,237	+		Rru_A1173	0.75	+0.8
1,390,535	+				-0.1
1,390,567	+				+0.9
1,390,567	+				+0.7
1,390,588	+				+0.9
1,390,661	+				-0.1
1,390,661	+				+0.8
1,390,662	-				-0.1
1,390,676	+				-0.1
1,390,765	-		Rru_A1174	0.19	+0.3
1,390,865	+		Rru_A1174	0.48	-0.1
1,390,865	+		Rru_A1174	0.48	+0.5
1,390,865	+		Rru_A1174	0.48	+1.0
1,390,865	+		Rru_A1174	0.48	-0.1
1,390,865	+		Rru_A1174	0.48	-1.1
1,390,866	-		Rru_A1174	0.49	-0.1
1,390,904	+		Rru_A1174	0.60	+1.1
1,390,905	-		Rru_A1174	0.60	-0.1
1,390,905	-		Rru_A1174	0.60	-1.1
1,390,905	-		Rru_A1174	0.60	-0.1
1,390,905	-		Rru_A1174	0.60	-0.1
1,391,161	+				-0.1
1,391,161	+				+0.6
1,391,161	+				+0.7
1,391,275	+				-1.1
1,391,294	+		Rru_A1175	0.10	+0.8
1,391,294	+		Rru_A1175	0.10	-1.1
1,391,294	+		Rru_A1175	0.10	-0.1
1,391,295	-		Rru_A1175	0.11	-0.1
1,391,295	-		Rru_A1175	0.11	-0.1
1,391,295	-		Rru_A1175	0.11	+0.4
1,391,518	+				+0.8