Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1078

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1076 and Rru_A1077 are separated by 141 nucleotidesRru_A1077 and Rru_A1078 are separated by 105 nucleotidesRru_A1078 and Rru_A1079 are separated by 7 nucleotides Rru_A1076: Rru_A1076 - Inositol monophosphatase (NCBI), at 1,267,737 to 1,268,528 _A1076 Rru_A1077: Rru_A1077 - Elongation factor P (NCBI), at 1,268,670 to 1,269,233 _A1077 Rru_A1078: Rru_A1078 - tRNA synthetase, class II (D, K and N) (NCBI), at 1,269,339 to 1,270,415 _A1078 Rru_A1079: Rru_A1079 - sodium/hydrogen exchanger (NCBI), at 1,270,423 to 1,272,255 _A1079 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -1 0 1 2at 1268.541 kb on - strandat 1268.541 kb on - strandat 1268.545 kb on - strandat 1269.284 kb on - strandat 1269.284 kb on - strandat 1270.153 kb on - strand, within Rru_A1078at 1270.769 kb on + strand, within Rru_A1079at 1270.769 kb on + strand, within Rru_A1079at 1270.770 kb on - strand, within Rru_A1079at 1270.770 kb on - strand, within Rru_A1079at 1270.770 kb on - strand, within Rru_A1079at 1270.770 kb on - strand, within Rru_A1079at 1270.851 kb on + strand, within Rru_A1079at 1270.851 kb on + strand, within Rru_A1079at 1270.852 kb on - strand, within Rru_A1079at 1270.852 kb on - strand, within Rru_A1079at 1270.852 kb on - strand, within Rru_A1079at 1270.852 kb on - strand, within Rru_A1079at 1270.852 kb on - strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.853 kb on + strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.854 kb on - strand, within Rru_A1079at 1270.989 kb on - strand, within Rru_A1079at 1271.037 kb on + strand, within Rru_A1079at 1271.038 kb on - strand, within Rru_A1079at 1271.038 kb on - strand, within Rru_A1079at 1271.038 kb on - strand, within Rru_A1079at 1271.261 kb on + strand, within Rru_A1079at 1271.262 kb on - strand, within Rru_A1079at 1271.262 kb on - strand, within Rru_A1079

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,268,541 - -0.1
1,268,541 - -0.1
1,268,545 - -0.1
1,269,284 - +0.4
1,269,284 - -0.1
1,270,153 - Rru_A1078 0.76 -0.1
1,270,769 + Rru_A1079 0.19 +1.4
1,270,769 + Rru_A1079 0.19 +1.4
1,270,770 - Rru_A1079 0.19 -1.1
1,270,770 - Rru_A1079 0.19 -0.1
1,270,770 - Rru_A1079 0.19 -0.1
1,270,770 - Rru_A1079 0.19 +1.5
1,270,851 + Rru_A1079 0.23 +0.9
1,270,851 + Rru_A1079 0.23 +1.0
1,270,852 - Rru_A1079 0.23 +1.5
1,270,852 - Rru_A1079 0.23 +1.3
1,270,852 - Rru_A1079 0.23 +2.3
1,270,852 - Rru_A1079 0.23 +1.5
1,270,852 - Rru_A1079 0.23 +0.8
1,270,853 + Rru_A1079 0.23 +1.1
1,270,853 + Rru_A1079 0.23 -0.1
1,270,853 + Rru_A1079 0.23 +1.1
1,270,853 + Rru_A1079 0.23 +1.6
1,270,853 + Rru_A1079 0.23 +1.0
1,270,853 + Rru_A1079 0.23 +0.8
1,270,853 + Rru_A1079 0.23 +1.0
1,270,853 + Rru_A1079 0.23 -0.5
1,270,853 + Rru_A1079 0.23 -0.1
1,270,853 + Rru_A1079 0.23 +1.2
1,270,853 + Rru_A1079 0.23 +0.4
1,270,853 + Rru_A1079 0.23 +1.6
1,270,853 + Rru_A1079 0.23 -0.1
1,270,854 - Rru_A1079 0.24 +1.6
1,270,854 - Rru_A1079 0.24 +2.3
1,270,854 - Rru_A1079 0.24 -0.1
1,270,854 - Rru_A1079 0.24 +1.0
1,270,854 - Rru_A1079 0.24 -0.1
1,270,854 - Rru_A1079 0.24 -0.1
1,270,854 - Rru_A1079 0.24 +0.6
1,270,854 - Rru_A1079 0.24 +0.7
1,270,854 - Rru_A1079 0.24 -0.1
1,270,854 - Rru_A1079 0.24 -1.1
1,270,854 - Rru_A1079 0.24 -0.1
1,270,854 - Rru_A1079 0.24 +1.4
1,270,854 - Rru_A1079 0.24 -0.1
1,270,989 - Rru_A1079 0.31 +1.3
1,271,037 + Rru_A1079 0.33 +1.7
1,271,038 - Rru_A1079 0.34 +1.1
1,271,038 - Rru_A1079 0.34 +1.5
1,271,038 - Rru_A1079 0.34 +1.4
1,271,261 + Rru_A1079 0.46 -0.1
1,271,262 - Rru_A1079 0.46 +0.0
1,271,262 - Rru_A1079 0.46 -0.1

Or see this region's nucleotide sequence