Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1076

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1075 and Rru_A1076 are separated by 110 nucleotidesRru_A1076 and Rru_A1077 are separated by 141 nucleotidesRru_A1077 and Rru_A1078 are separated by 105 nucleotides Rru_A1075: Rru_A1075 - hypothetical protein (NCBI), at 1,266,121 to 1,267,626 _A1075 Rru_A1076: Rru_A1076 - Inositol monophosphatase (NCBI), at 1,267,737 to 1,268,528 _A1076 Rru_A1077: Rru_A1077 - Elongation factor P (NCBI), at 1,268,670 to 1,269,233 _A1077 Rru_A1078: Rru_A1078 - tRNA synthetase, class II (D, K and N) (NCBI), at 1,269,339 to 1,270,415 _A1078 Position (kb) 1267 1268 1269Strain fitness (log2 ratio) -1 0 1 2at 1267.700 kb on - strandat 1267.700 kb on - strandat 1267.700 kb on - strandat 1267.739 kb on - strandat 1268.541 kb on - strandat 1268.541 kb on - strandat 1268.545 kb on - strandat 1269.284 kb on - strandat 1269.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,267,700 - +0.9
1,267,700 - +2.1
1,267,700 - +1.1
1,267,739 - -0.1
1,268,541 - -0.1
1,268,541 - -0.1
1,268,545 - -0.1
1,269,284 - +0.4
1,269,284 - -0.1

Or see this region's nucleotide sequence