Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1074

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1073 and Rru_A1074 are separated by 15 nucleotidesRru_A1074 and Rru_A1075 are separated by 151 nucleotides Rru_A1073: Rru_A1073 - OmpA/MotB (NCBI), at 1,263,498 to 1,264,625 _A1073 Rru_A1074: Rru_A1074 - MotA/TolQ/ExbB proton channel family protein (NCBI), at 1,264,641 to 1,265,969 _A1074 Rru_A1075: Rru_A1075 - hypothetical protein (NCBI), at 1,266,121 to 1,267,626 _A1075 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -1 0 1 2at 1264.804 kb on + strand, within Rru_A1074at 1264.805 kb on - strand, within Rru_A1074at 1265.203 kb on + strand, within Rru_A1074at 1265.204 kb on - strand, within Rru_A1074at 1265.708 kb on + strand, within Rru_A1074at 1266.123 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
1,264,804 + Rru_A1074 0.12 +1.9
1,264,805 - Rru_A1074 0.12 -1.1
1,265,203 + Rru_A1074 0.42 -0.1
1,265,204 - Rru_A1074 0.42 -0.1
1,265,708 + Rru_A1074 0.80 -1.7
1,266,123 - -0.1

Or see this region's nucleotide sequence