Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1038

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,229,852	-		Rru_A1037	0.20	+1.2
1,229,906	+		Rru_A1037	0.25	+0.3
1,229,906	+		Rru_A1037	0.25	+1.4
1,229,906	+		Rru_A1037	0.25	+0.3
1,229,907	-		Rru_A1037	0.25	+0.8
1,230,170	+		Rru_A1037	0.48	+0.9
1,230,170	+		Rru_A1037	0.48	+0.3
1,230,170	+		Rru_A1037	0.48	+0.9
1,230,170	+		Rru_A1037	0.48	+1.0
1,230,336	+		Rru_A1037	0.62	+2.1
1,230,590	+		Rru_A1037	0.84	+0.5
1,230,590	+		Rru_A1037	0.84	-0.1
1,230,814	+				-1.1
1,230,815	-				-0.1
1,230,820	+				-0.1
1,230,821	-				-0.1
1,231,012	+		Rru_A1038	0.19	+1.6
1,231,013	-		Rru_A1038	0.19	-0.1
1,231,204	+		Rru_A1038	0.38	+0.8
1,231,205	-		Rru_A1038	0.38	-0.1
1,231,481	-		Rru_A1038	0.65	+1.0
1,231,481	-		Rru_A1038	0.65	+0.7
1,231,519	+		Rru_A1038	0.68	+0.6
1,231,519	+		Rru_A1038	0.68	+0.8
1,231,520	-		Rru_A1038	0.69	+1.4
1,231,560	-		Rru_A1038	0.72	-0.1
1,231,769	+				+2.1
1,231,769	+				-0.1
1,231,833	+				-0.1
1,231,838	+				-0.1
1,231,838	+				-0.1
1,231,838	+				+0.2
1,231,838	+				-0.1
1,231,838	+				-0.1
1,231,838	+				+0.8
1,231,838	+				-0.1
1,231,838	+				-1.1
1,231,839	-				-0.1
1,231,839	-				+0.4
1,231,839	-				+0.4
1,231,877	+				+0.8
1,231,878	-				+1.2
1,231,956	+				-1.1
1,231,956	+				-1.1
1,231,957	-				+0.5
1,231,959	-				-0.1
1,232,010	+				+0.9
1,232,010	+				+0.8
1,232,219	-		Rru_A1039	0.23	+3.1
1,232,219	-		Rru_A1039	0.23	+1.3
1,232,219	-		Rru_A1039	0.23	-0.1
1,232,219	-		Rru_A1039	0.23	+1.5
1,232,362	+		Rru_A1039	0.39	-0.1
1,232,362	+		Rru_A1039	0.39	-0.1
1,232,362	+		Rru_A1039	0.39	-0.1
1,232,363	-		Rru_A1039	0.39	+0.8