Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0976 and Rru_A0977 overlap by 4 nucleotides Rru_A0977 and Rru_A0978 are separated by 358 nucleotides Rru_A0978 and Rru_A0979 are separated by 96 nucleotides
Rru_A0976: Rru_A0976 - Transcriptional modulator of MazE/toxin, MazF (NCBI), at 1,162,666 to 1,162,995
_A0976
Rru_A0977: Rru_A0977 - hypothetical protein (NCBI), at 1,162,992 to 1,163,294
_A0977
Rru_A0978: Rru_A0978 - Transcriptional Regulator, MarR family (NCBI), at 1,163,653 to 1,164,162
_A0978
Rru_A0979: Rru_A0979 - extracellular solute-binding protein, family 5 (NCBI), at 1,164,259 to 1,165,851
_A0979
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-1
0
1
2 at 1162.046 kb on - strand at 1162.249 kb on - strand at 1162.293 kb on + strand at 1162.387 kb on + strand at 1162.405 kb on + strand at 1162.406 kb on - strand at 1162.486 kb on + strand at 1162.534 kb on - strand at 1162.534 kb on - strand at 1162.534 kb on - strand at 1162.536 kb on + strand at 1162.717 kb on + strand, within Rru_A0976 at 1162.717 kb on + strand, within Rru_A0976 at 1162.718 kb on - strand, within Rru_A0976 at 1162.718 kb on - strand, within Rru_A0976 at 1162.875 kb on + strand, within Rru_A0976 at 1162.952 kb on + strand, within Rru_A0976 at 1163.155 kb on + strand, within Rru_A0977 at 1163.156 kb on - strand, within Rru_A0977 at 1163.156 kb on - strand, within Rru_A0977 at 1163.318 kb on - strand at 1163.318 kb on - strand at 1163.401 kb on + strand at 1163.713 kb on + strand, within Rru_A0978 at 1163.713 kb on + strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.773 kb on + strand, within Rru_A0978 at 1163.872 kb on + strand, within Rru_A0978 at 1163.873 kb on - strand, within Rru_A0978 at 1164.218 kb on + strand at 1164.219 kb on - strand at 1164.219 kb on - strand at 1164.253 kb on - strand at 1164.253 kb on - strand at 1164.253 kb on - strand at 1164.267 kb on + strand at 1164.267 kb on + strand at 1164.267 kb on + strand at 1164.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,162,046 - -0.0 1,162,249 - -0.3 1,162,293 + +1.3 1,162,387 + -0.0 1,162,405 + +0.8 1,162,406 - +1.0 1,162,486 + +0.6 1,162,534 - +1.2 1,162,534 - -0.0 1,162,534 - -0.0 1,162,536 + +1.3 1,162,717 + Rru_A0976 0.15 +1.2 1,162,717 + Rru_A0976 0.15 -0.0 1,162,718 - Rru_A0976 0.16 -0.0 1,162,718 - Rru_A0976 0.16 +0.6 1,162,875 + Rru_A0976 0.63 +1.6 1,162,952 + Rru_A0976 0.87 -0.0 1,163,155 + Rru_A0977 0.54 -0.8 1,163,156 - Rru_A0977 0.54 -0.0 1,163,156 - Rru_A0977 0.54 -0.0 1,163,318 - +0.0 1,163,318 - +1.5 1,163,401 + +1.8 1,163,713 + Rru_A0978 0.12 +1.0 1,163,713 + Rru_A0978 0.12 +1.4 1,163,714 - Rru_A0978 0.12 -0.0 1,163,714 - Rru_A0978 0.12 +1.4 1,163,714 - Rru_A0978 0.12 -0.0 1,163,714 - Rru_A0978 0.12 -0.0 1,163,714 - Rru_A0978 0.12 -0.0 1,163,773 + Rru_A0978 0.24 -0.0 1,163,872 + Rru_A0978 0.43 -0.0 1,163,873 - Rru_A0978 0.43 +0.5 1,164,218 + -1.6 1,164,219 - +1.1 1,164,219 - +1.0 1,164,253 - +1.5 1,164,253 - +0.5 1,164,253 - +1.0 1,164,267 + +2.6 1,164,267 + +1.1 1,164,267 + -0.0 1,164,274 - -0.0
Or see this region's nucleotide sequence