Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0918

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,090,970	+		Rru_A0917	0.19	+1.0
1,090,977	+		Rru_A0917	0.20	+1.4
1,091,109	+		Rru_A0917	0.32	+0.4
1,091,141	+		Rru_A0917	0.34	-1.0
1,091,141	+		Rru_A0917	0.34	+1.3
1,091,256	+		Rru_A0917	0.44	-0.0
1,091,256	+		Rru_A0917	0.44	-0.0
1,091,367	+		Rru_A0917	0.54	-0.0
1,091,480	-		Rru_A0917	0.64	-0.0
1,091,480	-		Rru_A0917	0.64	+4.0
1,091,480	-		Rru_A0917	0.64	-0.0
1,091,490	-		Rru_A0917	0.65	+0.7
1,091,493	+		Rru_A0917	0.65	+0.4
1,091,494	-		Rru_A0917	0.65	+1.2
1,091,568	+		Rru_A0917	0.71	-0.0
1,091,569	-		Rru_A0917	0.71	-1.6
1,091,569	-		Rru_A0917	0.71	+1.1
1,091,570	+		Rru_A0917	0.72	-0.0
1,091,571	-		Rru_A0917	0.72	-1.0
1,091,571	-		Rru_A0917	0.72	+1.0
1,091,571	-		Rru_A0917	0.72	-0.0
1,091,571	-		Rru_A0917	0.72	+0.7
1,091,640	+		Rru_A0917	0.78	+1.0
1,091,640	+		Rru_A0917	0.78	+1.2
1,091,641	-		Rru_A0917	0.78	+1.2
1,091,641	-		Rru_A0917	0.78	+0.6
1,091,811	+				-0.0
1,092,018	+				+1.1
1,092,018	+				-1.0
1,092,018	+				+0.9
1,092,205	+		Rru_A0918	0.18	-0.0
1,092,205	+		Rru_A0918	0.18	+1.1
1,092,205	+		Rru_A0918	0.18	-0.0
1,092,205	+		Rru_A0918	0.18	-0.0
1,092,206	-		Rru_A0918	0.19	-0.0
1,092,206	-		Rru_A0918	0.19	+1.2
1,092,206	-		Rru_A0918	0.19	-0.0
1,092,206	-		Rru_A0918	0.19	+1.3
1,092,325	+		Rru_A0918	0.27	+2.7
1,092,325	+		Rru_A0918	0.27	-0.0
1,092,325	+		Rru_A0918	0.27	+1.2
1,092,325	+		Rru_A0918	0.27	+1.0
1,092,427	+		Rru_A0918	0.35	-0.0
1,092,428	-		Rru_A0918	0.35	-0.0
1,092,429	+		Rru_A0918	0.35	+0.9
1,092,429	+		Rru_A0918	0.35	+1.0
1,092,430	-		Rru_A0918	0.35	+0.2
1,092,430	-		Rru_A0918	0.35	+1.3
1,092,430	-		Rru_A0918	0.35	+1.4
1,092,430	-		Rru_A0918	0.35	-0.0
1,092,430	-		Rru_A0918	0.35	+1.5
1,092,430	-		Rru_A0918	0.35	+1.9
1,092,436	+		Rru_A0918	0.36	+3.0
1,092,436	+		Rru_A0918	0.36	+0.4
1,092,437	-		Rru_A0918	0.36	-0.0
1,092,451	+		Rru_A0918	0.37	+1.3
1,092,451	+		Rru_A0918	0.37	+1.4
1,092,469	+		Rru_A0918	0.38	+0.9
1,092,469	+		Rru_A0918	0.38	-0.0
1,092,470	-		Rru_A0918	0.38	+1.3
1,092,470	-		Rru_A0918	0.38	+1.3
1,092,679	+		Rru_A0918	0.54	+1.0
1,092,703	+		Rru_A0918	0.56	+1.5
1,092,703	+		Rru_A0918	0.56	+1.8
1,092,704	-		Rru_A0918	0.56	+1.1
1,092,704	-		Rru_A0918	0.56	+1.2
1,092,769	+		Rru_A0918	0.61	+0.4
1,092,769	+		Rru_A0918	0.61	+1.1
1,092,769	+		Rru_A0918	0.61	+0.6
1,092,769	+		Rru_A0918	0.61	-0.0
1,092,769	+		Rru_A0918	0.61	-0.0
1,092,770	-		Rru_A0918	0.61	-0.0
1,092,770	-		Rru_A0918	0.61	-0.0
1,092,770	-		Rru_A0918	0.61	+1.3
1,092,835	+		Rru_A0918	0.66	-0.0
1,092,895	+		Rru_A0918	0.70	-0.0
1,092,896	-		Rru_A0918	0.70	-0.0
1,092,896	-		Rru_A0918	0.70	-0.0
1,092,896	-		Rru_A0918	0.70	+1.2
1,092,896	-		Rru_A0918	0.70	-0.0
1,093,226	+				-0.0
1,093,227	-				+0.6
1,093,230	+				-0.0
1,093,230	+				+0.8
1,093,230	+				+1.0
1,093,231	-				+1.2
1,093,231	-				+0.7
1,093,288	+				-0.0
1,093,289	-				+0.8
1,093,299	-				+1.2
1,093,397	+		Rru_A0919	0.16	-1.0
1,093,397	+		Rru_A0919	0.16	+1.5
1,093,398	-		Rru_A0919	0.16	+1.2
1,093,398	-		Rru_A0919	0.16	+0.2
1,093,398	-		Rru_A0919	0.16	+1.3
1,093,398	-		Rru_A0919	0.16	-0.0
1,093,480	-		Rru_A0919	0.24	-0.0
1,093,485	+		Rru_A0919	0.24	+1.2
1,093,486	-		Rru_A0919	0.24	+0.8
1,093,486	-		Rru_A0919	0.24	+0.4
1,093,486	-		Rru_A0919	0.24	-0.0
1,093,530	+		Rru_A0919	0.28	+1.2
1,093,531	-		Rru_A0919	0.28	-0.0
1,093,531	-		Rru_A0919	0.28	+0.7
1,093,531	-		Rru_A0919	0.28	+1.5
1,093,531	-		Rru_A0919	0.28	+1.3
1,093,659	+		Rru_A0919	0.40	-0.0
1,093,660	-		Rru_A0919	0.40	+1.0
1,093,660	-		Rru_A0919	0.40	+1.1
1,093,938	-		Rru_A0919	0.66	+0.8
1,093,962	-		Rru_A0919	0.69	+0.4
1,094,035	+		Rru_A0919	0.75	-0.0
1,094,080	-		Rru_A0919	0.80	-0.0
1,094,080	-		Rru_A0919	0.80	-0.0
1,094,181	+		Rru_A0919	0.89	-0.0
1,094,181	+		Rru_A0919	0.89	+1.2
1,094,182	-		Rru_A0919	0.89	+1.2
1,094,182	-		Rru_A0919	0.89	+2.7