Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0858 and Rru_A0859 are separated by 26 nucleotides Rru_A0859 and Rru_A0860 are separated by 72 nucleotides
Rru_A0858: Rru_A0858 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 1,022,400 to 1,023,947
_A0858
Rru_A0859: Rru_A0859 - Secretion protein HlyD (NCBI), at 1,023,974 to 1,025,182
_A0859
Rru_A0860: Rru_A0860 - RND efflux system, outer membrane lipoprotein, NodT (NCBI), at 1,025,255 to 1,026,727
_A0860
Position (kb) 1023
1024
1025
1026 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1023.038 kb on + strand, within Rru_A0858 at 1023.100 kb on + strand, within Rru_A0858 at 1023.427 kb on + strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.550 kb on + strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1025.008 kb on + strand, within Rru_A0859 at 1025.009 kb on - strand, within Rru_A0859 at 1025.022 kb on + strand, within Rru_A0859 at 1025.022 kb on + strand, within Rru_A0859 at 1025.022 kb on + strand, within Rru_A0859 at 1025.022 kb on + strand, within Rru_A0859 at 1025.023 kb on - strand, within Rru_A0859 at 1025.076 kb on + strand at 1025.242 kb on - strand at 1025.365 kb on - strand at 1025.435 kb on + strand, within Rru_A0860 at 1025.436 kb on - strand, within Rru_A0860 at 1025.439 kb on + strand, within Rru_A0860 at 1025.439 kb on + strand, within Rru_A0860 at 1025.439 kb on + strand, within Rru_A0860 at 1025.440 kb on - strand, within Rru_A0860 at 1025.440 kb on - strand, within Rru_A0860 at 1025.481 kb on + strand, within Rru_A0860 at 1025.482 kb on - strand, within Rru_A0860 at 1025.482 kb on - strand, within Rru_A0860 at 1025.482 kb on - strand, within Rru_A0860 at 1025.598 kb on + strand, within Rru_A0860 at 1025.599 kb on - strand, within Rru_A0860 at 1026.180 kb on + strand, within Rru_A0860 at 1026.181 kb on - strand, within Rru_A0860 at 1026.181 kb on - strand, within Rru_A0860
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,023,038 + Rru_A0858 0.41 +1.9 1,023,100 + Rru_A0858 0.45 -0.0 1,023,427 + Rru_A0858 0.66 -0.0 1,023,428 - Rru_A0858 0.66 -0.0 1,023,428 - Rru_A0858 0.66 +0.8 1,023,428 - Rru_A0858 0.66 -1.0 1,023,550 + Rru_A0858 0.74 +1.2 1,023,551 - Rru_A0858 0.74 -0.0 1,023,551 - Rru_A0858 0.74 +1.1 1,023,551 - Rru_A0858 0.74 +1.0 1,023,551 - Rru_A0858 0.74 -1.6 1,024,353 + Rru_A0859 0.31 -0.0 1,024,353 + Rru_A0859 0.31 +0.7 1,024,353 + Rru_A0859 0.31 -0.0 1,024,353 + Rru_A0859 0.31 -0.0 1,024,354 - Rru_A0859 0.31 +0.7 1,024,354 - Rru_A0859 0.31 +0.6 1,024,354 - Rru_A0859 0.31 -0.8 1,024,354 - Rru_A0859 0.31 +0.7 1,024,354 - Rru_A0859 0.31 +0.6 1,024,354 - Rru_A0859 0.31 -0.0 1,024,354 - Rru_A0859 0.31 -0.0 1,024,354 - Rru_A0859 0.31 -0.0 1,024,560 + Rru_A0859 0.48 -0.0 1,024,560 + Rru_A0859 0.48 -1.0 1,024,560 + Rru_A0859 0.48 -0.0 1,024,560 + Rru_A0859 0.48 +0.5 1,024,560 + Rru_A0859 0.48 +0.8 1,024,561 - Rru_A0859 0.49 -0.0 1,024,561 - Rru_A0859 0.49 +2.1 1,024,561 - Rru_A0859 0.49 -0.0 1,025,008 + Rru_A0859 0.86 -0.0 1,025,009 - Rru_A0859 0.86 -0.0 1,025,022 + Rru_A0859 0.87 +1.2 1,025,022 + Rru_A0859 0.87 -1.6 1,025,022 + Rru_A0859 0.87 +1.2 1,025,022 + Rru_A0859 0.87 -0.0 1,025,023 - Rru_A0859 0.87 +1.7 1,025,076 + -0.0 1,025,242 - +0.7 1,025,365 - -0.3 1,025,435 + Rru_A0860 0.12 +0.3 1,025,436 - Rru_A0860 0.12 +0.6 1,025,439 + Rru_A0860 0.12 -0.0 1,025,439 + Rru_A0860 0.12 +0.7 1,025,439 + Rru_A0860 0.12 +1.4 1,025,440 - Rru_A0860 0.13 +0.6 1,025,440 - Rru_A0860 0.13 -2.0 1,025,481 + Rru_A0860 0.15 -0.0 1,025,482 - Rru_A0860 0.15 -0.0 1,025,482 - Rru_A0860 0.15 +0.1 1,025,482 - Rru_A0860 0.15 -0.0 1,025,598 + Rru_A0860 0.23 +0.7 1,025,599 - Rru_A0860 0.23 -0.0 1,026,180 + Rru_A0860 0.63 +1.0 1,026,181 - Rru_A0860 0.63 -0.0 1,026,181 - Rru_A0860 0.63 +1.2
Or see this region's nucleotide sequence