Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0857 and Rru_A0858 are separated by 478 nucleotides Rru_A0858 and Rru_A0859 are separated by 26 nucleotides
Rru_A0857: Rru_A0857 - Sulfotransferase (NCBI), at 1,021,052 to 1,021,921
_A0857
Rru_A0858: Rru_A0858 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 1,022,400 to 1,023,947
_A0858
Rru_A0859: Rru_A0859 - Secretion protein HlyD (NCBI), at 1,023,974 to 1,025,182
_A0859
Position (kb) 1022
1023
1024 Strain fitness (log2 ratio) -1
0
1
2 at 1021.514 kb on + strand, within Rru_A0857 at 1021.665 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.721 kb on - strand, within Rru_A0857 at 1021.848 kb on + strand at 1021.848 kb on + strand at 1021.915 kb on + strand at 1021.915 kb on + strand at 1022.249 kb on + strand at 1022.250 kb on - strand at 1022.250 kb on - strand at 1022.250 kb on - strand at 1022.649 kb on + strand, within Rru_A0858 at 1022.653 kb on + strand, within Rru_A0858 at 1022.654 kb on - strand, within Rru_A0858 at 1022.654 kb on - strand, within Rru_A0858 at 1022.654 kb on - strand, within Rru_A0858 at 1022.741 kb on - strand, within Rru_A0858 at 1023.038 kb on + strand, within Rru_A0858 at 1023.100 kb on + strand, within Rru_A0858 at 1023.427 kb on + strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.550 kb on + strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,021,514 + Rru_A0857 0.53 -0.0 1,021,665 + Rru_A0857 0.70 +1.1 1,021,720 + Rru_A0857 0.77 -1.0 1,021,720 + Rru_A0857 0.77 +1.7 1,021,720 + Rru_A0857 0.77 -0.0 1,021,720 + Rru_A0857 0.77 -0.0 1,021,721 - Rru_A0857 0.77 -0.0 1,021,848 + -0.0 1,021,848 + +0.9 1,021,915 + +0.4 1,021,915 + +0.5 1,022,249 + +1.0 1,022,250 - +1.2 1,022,250 - +1.2 1,022,250 - +0.8 1,022,649 + Rru_A0858 0.16 -0.0 1,022,653 + Rru_A0858 0.16 +1.1 1,022,654 - Rru_A0858 0.16 +0.5 1,022,654 - Rru_A0858 0.16 +1.4 1,022,654 - Rru_A0858 0.16 +0.8 1,022,741 - Rru_A0858 0.22 -1.0 1,023,038 + Rru_A0858 0.41 +1.9 1,023,100 + Rru_A0858 0.45 -0.0 1,023,427 + Rru_A0858 0.66 -0.0 1,023,428 - Rru_A0858 0.66 -0.0 1,023,428 - Rru_A0858 0.66 +0.8 1,023,428 - Rru_A0858 0.66 -1.0 1,023,550 + Rru_A0858 0.74 +1.2 1,023,551 - Rru_A0858 0.74 -0.0 1,023,551 - Rru_A0858 0.74 +1.1 1,023,551 - Rru_A0858 0.74 +1.0 1,023,551 - Rru_A0858 0.74 -1.6 1,024,353 + Rru_A0859 0.31 -0.0 1,024,353 + Rru_A0859 0.31 +0.7 1,024,353 + Rru_A0859 0.31 -0.0 1,024,353 + Rru_A0859 0.31 -0.0 1,024,354 - Rru_A0859 0.31 +0.7 1,024,354 - Rru_A0859 0.31 +0.6 1,024,354 - Rru_A0859 0.31 -0.8 1,024,354 - Rru_A0859 0.31 +0.7 1,024,354 - Rru_A0859 0.31 +0.6 1,024,354 - Rru_A0859 0.31 -0.0 1,024,354 - Rru_A0859 0.31 -0.0 1,024,354 - Rru_A0859 0.31 -0.0 1,024,560 + Rru_A0859 0.48 -0.0 1,024,560 + Rru_A0859 0.48 -1.0 1,024,560 + Rru_A0859 0.48 -0.0 1,024,560 + Rru_A0859 0.48 +0.5 1,024,560 + Rru_A0859 0.48 +0.8 1,024,561 - Rru_A0859 0.49 -0.0 1,024,561 - Rru_A0859 0.49 +2.1 1,024,561 - Rru_A0859 0.49 -0.0
Or see this region's nucleotide sequence