Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0812

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0810 and Rru_A0811 are separated by 283 nucleotidesRru_A0811 and Rru_A0812 are separated by 7 nucleotidesRru_A0812 and Rru_A0813 are separated by 24 nucleotides Rru_A0810: Rru_A0810 - hypothetical protein (NCBI), at 966,643 to 966,933 _A0810 Rru_A0811: Rru_A0811 - Helix-turn-helix protein, CopG (NCBI), at 967,217 to 967,687 _A0811 Rru_A0812: Rru_A0812 - no description, at 967,695 to 968,819 _A0812 Rru_A0813: Rru_A0813 - no description, at 968,844 to 969,686 _A0813 Position (kb) 967 968 969Strain fitness (log2 ratio) -1 0 1 2at 966.749 kb on + strand, within Rru_A0810at 966.749 kb on + strand, within Rru_A0810at 966.749 kb on + strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.750 kb on - strand, within Rru_A0810at 966.756 kb on + strand, within Rru_A0810at 966.756 kb on + strand, within Rru_A0810at 966.831 kb on - strand, within Rru_A0810at 966.835 kb on - strand, within Rru_A0810at 966.835 kb on - strand, within Rru_A0810at 966.835 kb on - strand, within Rru_A0810at 966.916 kb on + strandat 967.086 kb on + strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.087 kb on - strandat 967.136 kb on + strandat 967.136 kb on + strandat 967.137 kb on - strandat 967.137 kb on - strandat 967.191 kb on + strandat 967.369 kb on - strand, within Rru_A0811at 967.665 kb on + strandat 967.665 kb on + strandat 967.665 kb on + strandat 967.665 kb on + strandat 967.665 kb on + strandat 967.666 kb on - strandat 967.857 kb on - strand, within Rru_A0812at 967.932 kb on + strand, within Rru_A0812at 968.057 kb on - strand, within Rru_A0812at 968.059 kb on + strand, within Rru_A0812at 968.059 kb on + strand, within Rru_A0812at 968.221 kb on + strand, within Rru_A0812at 968.222 kb on - strand, within Rru_A0812at 968.222 kb on - strand, within Rru_A0812at 968.222 kb on - strand, within Rru_A0812at 968.451 kb on + strand, within Rru_A0812at 968.599 kb on + strand, within Rru_A0812at 968.846 kb on - strandat 968.902 kb on + strandat 968.903 kb on - strandat 969.061 kb on + strand, within Rru_A0813at 969.061 kb on + strand, within Rru_A0813at 969.061 kb on + strand, within Rru_A0813at 969.062 kb on - strand, within Rru_A0813at 969.274 kb on + strand, within Rru_A0813at 969.275 kb on - strand, within Rru_A0813at 969.275 kb on - strand, within Rru_A0813at 969.367 kb on + strand, within Rru_A0813at 969.367 kb on + strand, within Rru_A0813at 969.368 kb on - strand, within Rru_A0813at 969.455 kb on + strand, within Rru_A0813at 969.455 kb on + strand, within Rru_A0813at 969.455 kb on + strand, within Rru_A0813at 969.487 kb on + strand, within Rru_A0813at 969.488 kb on - strand, within Rru_A0813at 969.488 kb on - strand, within Rru_A0813at 969.496 kb on + strand, within Rru_A0813at 969.496 kb on + strand, within Rru_A0813at 969.496 kb on + strand, within Rru_A0813at 969.497 kb on - strand, within Rru_A0813at 969.497 kb on - strand, within Rru_A0813at 969.517 kb on + strand, within Rru_A0813at 969.518 kb on - strand, within Rru_A0813at 969.533 kb on - strand, within Rru_A0813

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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966,749 + Rru_A0810 0.36 +0.9
966,749 + Rru_A0810 0.36 +0.1
966,749 + Rru_A0810 0.36 -0.0
966,750 - Rru_A0810 0.37 +0.9
966,750 - Rru_A0810 0.37 +0.5
966,750 - Rru_A0810 0.37 -0.0
966,750 - Rru_A0810 0.37 +1.2
966,750 - Rru_A0810 0.37 -0.0
966,756 + Rru_A0810 0.39 +1.2
966,756 + Rru_A0810 0.39 -0.0
966,831 - Rru_A0810 0.65 +1.5
966,835 - Rru_A0810 0.66 -0.0
966,835 - Rru_A0810 0.66 -1.0
966,835 - Rru_A0810 0.66 +0.8
966,916 + -0.0
967,086 + +0.9
967,087 - +0.7
967,087 - -0.0
967,087 - -0.0
967,087 - +1.1
967,087 - +1.9
967,136 + -0.0
967,136 + -1.0
967,137 - -0.0
967,137 - +0.6
967,191 + +1.3
967,369 - Rru_A0811 0.32 -0.0
967,665 + +0.7
967,665 + +1.0
967,665 + +1.0
967,665 + +0.9
967,665 + +1.0
967,666 - -1.0
967,857 - Rru_A0812 0.14 +1.7
967,932 + Rru_A0812 0.21 -0.0
968,057 - Rru_A0812 0.32 +1.0
968,059 + Rru_A0812 0.32 -0.0
968,059 + Rru_A0812 0.32 -0.0
968,221 + Rru_A0812 0.47 +1.1
968,222 - Rru_A0812 0.47 -0.0
968,222 - Rru_A0812 0.47 +1.9
968,222 - Rru_A0812 0.47 +1.1
968,451 + Rru_A0812 0.67 +1.5
968,599 + Rru_A0812 0.80 +1.3
968,846 - +1.0
968,902 + +0.8
968,903 - -1.0
969,061 + Rru_A0813 0.26 +0.7
969,061 + Rru_A0813 0.26 -0.0
969,061 + Rru_A0813 0.26 -0.0
969,062 - Rru_A0813 0.26 +1.0
969,274 + Rru_A0813 0.51 -0.0
969,275 - Rru_A0813 0.51 -0.1
969,275 - Rru_A0813 0.51 +1.3
969,367 + Rru_A0813 0.62 -0.0
969,367 + Rru_A0813 0.62 -0.0
969,368 - Rru_A0813 0.62 -0.0
969,455 + Rru_A0813 0.72 +1.1
969,455 + Rru_A0813 0.72 -0.0
969,455 + Rru_A0813 0.72 -0.0
969,487 + Rru_A0813 0.76 +1.1
969,488 - Rru_A0813 0.76 -0.0
969,488 - Rru_A0813 0.76 -0.0
969,496 + Rru_A0813 0.77 -0.0
969,496 + Rru_A0813 0.77 -0.0
969,496 + Rru_A0813 0.77 -0.0
969,497 - Rru_A0813 0.77 -0.0
969,497 - Rru_A0813 0.77 +0.7
969,517 + Rru_A0813 0.80 -0.0
969,518 - Rru_A0813 0.80 -0.0
969,533 - Rru_A0813 0.82 -0.0

Or see this region's nucleotide sequence