Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0800 and Rru_A0801 overlap by 4 nucleotides Rru_A0801 and Rru_A0802 are separated by 6 nucleotides Rru_A0802 and Rru_A0803 overlap by 1 nucleotides
Rru_A0800: Rru_A0800 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 955,362 to 956,432
_A0800
Rru_A0801: Rru_A0801 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 956,429 to 957,319
_A0801
Rru_A0802: Rru_A0802 - ABC transporter component (NCBI), at 957,326 to 958,156
_A0802
Rru_A0803: Rru_A0803 - ABC transporter component (NCBI), at 958,156 to 958,914
_A0803
Position (kb) 956
957
958 Strain fitness (log2 ratio) -1
0
1
2 at 955.799 kb on + strand, within Rru_A0800 at 955.825 kb on + strand, within Rru_A0800 at 955.825 kb on + strand, within Rru_A0800 at 955.825 kb on + strand, within Rru_A0800 at 955.826 kb on - strand, within Rru_A0800 at 955.826 kb on - strand, within Rru_A0800 at 955.848 kb on + strand, within Rru_A0800 at 955.896 kb on + strand, within Rru_A0800 at 955.945 kb on - strand, within Rru_A0800 at 956.062 kb on - strand, within Rru_A0800 at 956.064 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.127 kb on + strand, within Rru_A0800 at 956.128 kb on - strand, within Rru_A0800 at 956.128 kb on - strand, within Rru_A0800 at 956.128 kb on - strand, within Rru_A0800 at 956.232 kb on + strand, within Rru_A0800 at 956.232 kb on + strand, within Rru_A0800 at 956.232 kb on + strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.233 kb on - strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.298 kb on + strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.299 kb on - strand, within Rru_A0800 at 956.603 kb on + strand, within Rru_A0801 at 956.690 kb on - strand, within Rru_A0801 at 956.830 kb on + strand, within Rru_A0801 at 956.831 kb on - strand, within Rru_A0801 at 957.331 kb on + strand at 957.331 kb on + strand at 957.331 kb on + strand at 957.331 kb on + strand at 957.332 kb on - strand at 957.332 kb on - strand at 957.332 kb on - strand at 957.499 kb on + strand, within Rru_A0802 at 957.500 kb on - strand, within Rru_A0802 at 957.681 kb on - strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.773 kb on + strand, within Rru_A0802 at 957.774 kb on - strand, within Rru_A0802 at 957.774 kb on - strand, within Rru_A0802 at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.076 kb on + strand at 958.077 kb on - strand at 958.077 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand at 958.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 955,799 + Rru_A0800 0.41 +1.2 955,825 + Rru_A0800 0.43 +0.7 955,825 + Rru_A0800 0.43 -0.0 955,825 + Rru_A0800 0.43 +0.7 955,826 - Rru_A0800 0.43 +1.0 955,826 - Rru_A0800 0.43 -0.0 955,848 + Rru_A0800 0.45 -0.0 955,896 + Rru_A0800 0.50 -0.0 955,945 - Rru_A0800 0.54 +1.2 956,062 - Rru_A0800 0.65 -1.0 956,064 + Rru_A0800 0.66 +1.0 956,127 + Rru_A0800 0.71 -1.5 956,127 + Rru_A0800 0.71 +0.8 956,127 + Rru_A0800 0.71 -0.0 956,127 + Rru_A0800 0.71 -0.0 956,127 + Rru_A0800 0.71 +0.9 956,128 - Rru_A0800 0.72 +1.2 956,128 - Rru_A0800 0.72 +0.9 956,128 - Rru_A0800 0.72 -0.0 956,232 + Rru_A0800 0.81 -0.0 956,232 + Rru_A0800 0.81 -0.0 956,232 + Rru_A0800 0.81 -0.0 956,233 - Rru_A0800 0.81 -0.0 956,233 - Rru_A0800 0.81 +1.8 956,233 - Rru_A0800 0.81 -0.0 956,233 - Rru_A0800 0.81 +1.4 956,298 + Rru_A0800 0.87 +0.4 956,298 + Rru_A0800 0.87 +0.4 956,298 + Rru_A0800 0.87 -0.0 956,298 + Rru_A0800 0.87 -1.0 956,299 - Rru_A0800 0.87 -0.0 956,299 - Rru_A0800 0.87 -1.6 956,299 - Rru_A0800 0.87 -0.0 956,299 - Rru_A0800 0.87 -0.0 956,299 - Rru_A0800 0.87 -0.0 956,299 - Rru_A0800 0.87 +2.0 956,603 + Rru_A0801 0.20 +0.9 956,690 - Rru_A0801 0.29 -0.0 956,830 + Rru_A0801 0.45 -0.0 956,831 - Rru_A0801 0.45 -0.0 957,331 + +1.4 957,331 + +1.1 957,331 + +0.1 957,331 + +1.0 957,332 - +1.0 957,332 - +0.7 957,332 - +0.9 957,499 + Rru_A0802 0.21 +0.5 957,500 - Rru_A0802 0.21 +1.2 957,681 - Rru_A0802 0.43 -0.0 957,773 + Rru_A0802 0.54 -0.0 957,773 + Rru_A0802 0.54 +0.5 957,773 + Rru_A0802 0.54 -0.0 957,773 + Rru_A0802 0.54 -0.0 957,774 - Rru_A0802 0.54 -0.0 957,774 - Rru_A0802 0.54 +1.3 958,076 + -0.0 958,076 + -1.6 958,076 + +0.3 958,076 + -1.0 958,076 + +1.2 958,077 - +1.1 958,077 - -0.0 958,173 - -0.0 958,173 - +0.7 958,173 - -0.0 958,173 - +0.7
Or see this region's nucleotide sequence