Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0774 and Rru_A0775 are separated by 260 nucleotides Rru_A0775 and Rru_A0776 overlap by 4 nucleotides
Rru_A0774: Rru_A0774 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 924,918 to 926,234
_A0774
Rru_A0775: Rru_A0775 - 2OG-Fe(II) oxygenase (NCBI), at 926,495 to 927,526
_A0775
Rru_A0776: Rru_A0776 - Aspartate/tyrosine/aromatic aminotransferase (NCBI), at 927,523 to 928,698
_A0776
Position (kb) 926
927
928 Strain fitness (log2 ratio) -1
0
1
2 at 925.585 kb on + strand, within Rru_A0774 at 925.585 kb on + strand, within Rru_A0774 at 925.586 kb on - strand, within Rru_A0774 at 925.586 kb on - strand, within Rru_A0774 at 925.586 kb on - strand, within Rru_A0774 at 925.586 kb on - strand, within Rru_A0774 at 925.586 kb on - strand, within Rru_A0774 at 925.600 kb on + strand, within Rru_A0774 at 925.600 kb on + strand, within Rru_A0774 at 925.601 kb on - strand, within Rru_A0774 at 925.601 kb on - strand, within Rru_A0774 at 925.656 kb on - strand, within Rru_A0774 at 925.658 kb on + strand, within Rru_A0774 at 925.754 kb on - strand, within Rru_A0774 at 925.754 kb on - strand, within Rru_A0774 at 925.754 kb on - strand, within Rru_A0774 at 925.756 kb on + strand, within Rru_A0774 at 925.756 kb on + strand, within Rru_A0774 at 925.756 kb on + strand, within Rru_A0774 at 925.757 kb on - strand, within Rru_A0774 at 925.877 kb on - strand, within Rru_A0774 at 925.898 kb on + strand, within Rru_A0774 at 925.898 kb on + strand, within Rru_A0774 at 925.898 kb on + strand, within Rru_A0774 at 925.898 kb on + strand, within Rru_A0774 at 925.898 kb on + strand, within Rru_A0774 at 925.899 kb on - strand, within Rru_A0774 at 925.899 kb on - strand, within Rru_A0774 at 925.899 kb on - strand, within Rru_A0774 at 925.901 kb on + strand, within Rru_A0774 at 926.039 kb on + strand, within Rru_A0774 at 926.041 kb on + strand, within Rru_A0774 at 926.042 kb on - strand, within Rru_A0774 at 926.104 kb on + strand at 926.104 kb on + strand at 926.104 kb on + strand at 926.104 kb on + strand at 926.105 kb on - strand at 926.435 kb on + strand at 926.621 kb on + strand, within Rru_A0775 at 926.622 kb on - strand, within Rru_A0775 at 926.622 kb on - strand, within Rru_A0775 at 926.750 kb on + strand, within Rru_A0775 at 926.750 kb on + strand, within Rru_A0775 at 926.752 kb on + strand, within Rru_A0775 at 926.753 kb on - strand, within Rru_A0775 at 926.753 kb on - strand, within Rru_A0775 at 926.753 kb on - strand, within Rru_A0775 at 927.018 kb on - strand, within Rru_A0775 at 927.018 kb on - strand, within Rru_A0775 at 927.251 kb on + strand, within Rru_A0775 at 927.251 kb on + strand, within Rru_A0775 at 927.251 kb on + strand, within Rru_A0775 at 927.895 kb on + strand, within Rru_A0776 at 927.896 kb on - strand, within Rru_A0776 at 928.126 kb on + strand, within Rru_A0776 at 928.471 kb on + strand, within Rru_A0776 at 928.472 kb on - strand, within Rru_A0776 at 928.472 kb on - strand, within Rru_A0776
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 925,585 + Rru_A0774 0.51 +1.0 925,585 + Rru_A0774 0.51 +1.3 925,586 - Rru_A0774 0.51 +1.3 925,586 - Rru_A0774 0.51 -0.0 925,586 - Rru_A0774 0.51 -1.0 925,586 - Rru_A0774 0.51 +0.8 925,586 - Rru_A0774 0.51 +1.1 925,600 + Rru_A0774 0.52 +0.4 925,600 + Rru_A0774 0.52 +1.1 925,601 - Rru_A0774 0.52 -0.0 925,601 - Rru_A0774 0.52 -0.0 925,656 - Rru_A0774 0.56 +0.9 925,658 + Rru_A0774 0.56 +1.2 925,754 - Rru_A0774 0.63 +1.4 925,754 - Rru_A0774 0.63 -0.0 925,754 - Rru_A0774 0.63 -0.0 925,756 + Rru_A0774 0.64 -0.0 925,756 + Rru_A0774 0.64 +0.9 925,756 + Rru_A0774 0.64 +1.5 925,757 - Rru_A0774 0.64 +1.1 925,877 - Rru_A0774 0.73 -0.0 925,898 + Rru_A0774 0.74 -0.0 925,898 + Rru_A0774 0.74 +1.2 925,898 + Rru_A0774 0.74 -0.0 925,898 + Rru_A0774 0.74 -0.0 925,898 + Rru_A0774 0.74 +1.4 925,899 - Rru_A0774 0.74 -0.0 925,899 - Rru_A0774 0.74 -0.0 925,899 - Rru_A0774 0.74 +1.0 925,901 + Rru_A0774 0.75 -0.0 926,039 + Rru_A0774 0.85 +1.2 926,041 + Rru_A0774 0.85 -0.0 926,042 - Rru_A0774 0.85 -0.0 926,104 + +0.9 926,104 + +1.0 926,104 + -0.0 926,104 + +0.4 926,105 - -0.0 926,435 + -0.0 926,621 + Rru_A0775 0.12 +0.8 926,622 - Rru_A0775 0.12 +0.3 926,622 - Rru_A0775 0.12 -0.7 926,750 + Rru_A0775 0.25 -0.0 926,750 + Rru_A0775 0.25 +0.7 926,752 + Rru_A0775 0.25 +1.2 926,753 - Rru_A0775 0.25 +1.2 926,753 - Rru_A0775 0.25 +0.6 926,753 - Rru_A0775 0.25 -0.0 927,018 - Rru_A0775 0.51 +0.9 927,018 - Rru_A0775 0.51 -0.0 927,251 + Rru_A0775 0.73 -0.0 927,251 + Rru_A0775 0.73 -0.0 927,251 + Rru_A0775 0.73 +1.1 927,895 + Rru_A0776 0.32 -0.0 927,896 - Rru_A0776 0.32 +1.2 928,126 + Rru_A0776 0.51 -0.0 928,471 + Rru_A0776 0.81 +0.3 928,472 - Rru_A0776 0.81 +2.3 928,472 - Rru_A0776 0.81 -1.6
Or see this region's nucleotide sequence