Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0761

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0760 and Rru_A0761 are separated by 39 nucleotidesRru_A0761 and Rru_A0762 are separated by 38 nucleotides Rru_A0760: Rru_A0760 - hypothetical protein (NCBI), at 892,620 to 893,921 _A0760 Rru_A0761: Rru_A0761 - Radical SAM (NCBI), at 893,961 to 895,472 _A0761 Rru_A0762: Rru_A0762 - Fe-S oxidoreductase (NCBI), at 895,511 to 896,965 _A0762 Position (kb) 893 894 895 896Strain fitness (log2 ratio) -1 0 1 2at 893.679 kb on + strand, within Rru_A0760at 893.679 kb on + strand, within Rru_A0760at 893.680 kb on - strand, within Rru_A0760at 893.700 kb on + strand, within Rru_A0760at 893.700 kb on + strand, within Rru_A0760at 893.700 kb on + strand, within Rru_A0760at 893.701 kb on - strand, within Rru_A0760at 893.724 kb on + strand, within Rru_A0760at 893.724 kb on + strand, within Rru_A0760at 893.725 kb on - strand, within Rru_A0760at 893.725 kb on - strand, within Rru_A0760at 893.725 kb on - strand, within Rru_A0760at 893.896 kb on - strandat 893.977 kb on + strandat 894.194 kb on + strand, within Rru_A0761at 894.234 kb on + strand, within Rru_A0761at 894.234 kb on + strand, within Rru_A0761at 894.234 kb on + strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.531 kb on + strand, within Rru_A0761at 894.562 kb on - strand, within Rru_A0761at 894.564 kb on - strand, within Rru_A0761at 894.626 kb on + strand, within Rru_A0761at 894.740 kb on + strand, within Rru_A0761at 894.740 kb on + strand, within Rru_A0761at 894.741 kb on - strand, within Rru_A0761at 894.741 kb on - strand, within Rru_A0761at 894.882 kb on - strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.984 kb on + strand, within Rru_A0761at 895.306 kb on - strand, within Rru_A0761at 895.306 kb on - strand, within Rru_A0761at 895.470 kb on + strandat 895.471 kb on - strandat 895.471 kb on - strandat 895.499 kb on - strandat 895.570 kb on + strandat 895.727 kb on + strand, within Rru_A0762at 895.728 kb on - strand, within Rru_A0762at 895.728 kb on - strand, within Rru_A0762at 895.728 kb on - strand, within Rru_A0762at 895.745 kb on + strand, within Rru_A0762at 895.745 kb on + strand, within Rru_A0762at 895.745 kb on + strand, within Rru_A0762at 895.746 kb on - strand, within Rru_A0762at 895.746 kb on - strand, within Rru_A0762at 895.746 kb on - strand, within Rru_A0762at 895.749 kb on - strand, within Rru_A0762at 895.829 kb on + strand, within Rru_A0762at 895.835 kb on + strand, within Rru_A0762at 895.835 kb on + strand, within Rru_A0762at 895.835 kb on + strand, within Rru_A0762at 895.836 kb on - strand, within Rru_A0762at 895.836 kb on - strand, within Rru_A0762at 896.024 kb on - strand, within Rru_A0762at 896.024 kb on - strand, within Rru_A0762at 896.066 kb on + strand, within Rru_A0762at 896.066 kb on + strand, within Rru_A0762at 896.067 kb on - strand, within Rru_A0762at 896.150 kb on + strand, within Rru_A0762at 896.199 kb on - strand, within Rru_A0762at 896.225 kb on + strand, within Rru_A0762at 896.225 kb on + strand, within Rru_A0762at 896.245 kb on + strand, within Rru_A0762at 896.246 kb on - strand, within Rru_A0762at 896.253 kb on - strand, within Rru_A0762at 896.316 kb on - strand, within Rru_A0762at 896.316 kb on - strand, within Rru_A0762at 896.336 kb on + strand, within Rru_A0762at 896.381 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.463 kb on - strand, within Rru_A0762

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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893,679 + Rru_A0760 0.81 -0.0
893,679 + Rru_A0760 0.81 -0.0
893,680 - Rru_A0760 0.81 +0.3
893,700 + Rru_A0760 0.83 -0.0
893,700 + Rru_A0760 0.83 +0.4
893,700 + Rru_A0760 0.83 +1.2
893,701 - Rru_A0760 0.83 +1.3
893,724 + Rru_A0760 0.85 +1.2
893,724 + Rru_A0760 0.85 +2.3
893,725 - Rru_A0760 0.85 -0.0
893,725 - Rru_A0760 0.85 +1.0
893,725 - Rru_A0760 0.85 +2.5
893,896 - -0.0
893,977 + +1.2
894,194 + Rru_A0761 0.15 -0.0
894,234 + Rru_A0761 0.18 +1.3
894,234 + Rru_A0761 0.18 +1.4
894,234 + Rru_A0761 0.18 +1.6
894,235 - Rru_A0761 0.18 -0.0
894,235 - Rru_A0761 0.18 -0.0
894,235 - Rru_A0761 0.18 -0.0
894,235 - Rru_A0761 0.18 +1.3
894,408 + Rru_A0761 0.30 +1.3
894,408 + Rru_A0761 0.30 -1.6
894,408 + Rru_A0761 0.30 +1.3
894,408 + Rru_A0761 0.30 -0.0
894,408 + Rru_A0761 0.30 +1.0
894,408 + Rru_A0761 0.30 +0.6
894,409 - Rru_A0761 0.30 +1.0
894,409 - Rru_A0761 0.30 +1.7
894,409 - Rru_A0761 0.30 +1.6
894,409 - Rru_A0761 0.30 +0.8
894,409 - Rru_A0761 0.30 +1.7
894,409 - Rru_A0761 0.30 +1.0
894,531 + Rru_A0761 0.38 -0.0
894,562 - Rru_A0761 0.40 +1.3
894,564 - Rru_A0761 0.40 +2.2
894,626 + Rru_A0761 0.44 +1.2
894,740 + Rru_A0761 0.52 +1.3
894,740 + Rru_A0761 0.52 +1.1
894,741 - Rru_A0761 0.52 -0.0
894,741 - Rru_A0761 0.52 +1.0
894,882 - Rru_A0761 0.61 -0.0
894,888 + Rru_A0761 0.61 +0.9
894,888 + Rru_A0761 0.61 +1.2
894,888 + Rru_A0761 0.61 +1.0
894,888 + Rru_A0761 0.61 +1.9
894,888 + Rru_A0761 0.61 +1.6
894,889 - Rru_A0761 0.61 -0.5
894,889 - Rru_A0761 0.61 +0.8
894,889 - Rru_A0761 0.61 +0.8
894,889 - Rru_A0761 0.61 +1.7
894,889 - Rru_A0761 0.61 +1.1
894,889 - Rru_A0761 0.61 -0.6
894,889 - Rru_A0761 0.61 +1.1
894,890 + Rru_A0761 0.61 +1.0
894,890 + Rru_A0761 0.61 +0.8
894,890 + Rru_A0761 0.61 +1.3
894,890 + Rru_A0761 0.61 +1.1
894,890 + Rru_A0761 0.61 -0.0
894,890 + Rru_A0761 0.61 -0.5
894,890 + Rru_A0761 0.61 -0.3
894,890 + Rru_A0761 0.61 -0.0
894,891 - Rru_A0761 0.62 +1.0
894,891 - Rru_A0761 0.62 -0.0
894,891 - Rru_A0761 0.62 -0.0
894,984 + Rru_A0761 0.68 +1.6
895,306 - Rru_A0761 0.89 -0.0
895,306 - Rru_A0761 0.89 +1.2
895,470 + -0.0
895,471 - +0.1
895,471 - -1.0
895,499 - +1.1
895,570 + -0.0
895,727 + Rru_A0762 0.15 -0.0
895,728 - Rru_A0762 0.15 +1.1
895,728 - Rru_A0762 0.15 +1.2
895,728 - Rru_A0762 0.15 -0.0
895,745 + Rru_A0762 0.16 +1.6
895,745 + Rru_A0762 0.16 +1.3
895,745 + Rru_A0762 0.16 +1.0
895,746 - Rru_A0762 0.16 -0.0
895,746 - Rru_A0762 0.16 +1.3
895,746 - Rru_A0762 0.16 -0.0
895,749 - Rru_A0762 0.16 -0.0
895,829 + Rru_A0762 0.22 +1.2
895,835 + Rru_A0762 0.22 +0.8
895,835 + Rru_A0762 0.22 -0.0
895,835 + Rru_A0762 0.22 +1.6
895,836 - Rru_A0762 0.22 -1.0
895,836 - Rru_A0762 0.22 -0.0
896,024 - Rru_A0762 0.35 +1.3
896,024 - Rru_A0762 0.35 +1.1
896,066 + Rru_A0762 0.38 -0.0
896,066 + Rru_A0762 0.38 +1.6
896,067 - Rru_A0762 0.38 +1.0
896,150 + Rru_A0762 0.44 +0.7
896,199 - Rru_A0762 0.47 +1.8
896,225 + Rru_A0762 0.49 -0.0
896,225 + Rru_A0762 0.49 -0.0
896,245 + Rru_A0762 0.50 +0.9
896,246 - Rru_A0762 0.51 +0.2
896,253 - Rru_A0762 0.51 -0.0
896,316 - Rru_A0762 0.55 +1.1
896,316 - Rru_A0762 0.55 -0.0
896,336 + Rru_A0762 0.57 +0.7
896,381 + Rru_A0762 0.60 +0.8
896,443 + Rru_A0762 0.64 +1.9
896,443 + Rru_A0762 0.64 +0.5
896,443 + Rru_A0762 0.64 +1.0
896,443 + Rru_A0762 0.64 +2.1
896,444 - Rru_A0762 0.64 +1.1
896,444 - Rru_A0762 0.64 +1.0
896,444 - Rru_A0762 0.64 -0.0
896,462 + Rru_A0762 0.65 +1.1
896,462 + Rru_A0762 0.65 +1.4
896,462 + Rru_A0762 0.65 -0.0
896,463 - Rru_A0762 0.65 -0.0

Or see this region's nucleotide sequence