Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0756

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0755 and Rru_A0756 are separated by 24 nucleotidesRru_A0756 and Rru_A0757 are separated by 164 nucleotidesRru_A0757 and Rru_A0758 overlap by 4 nucleotides Rru_A0755: Rru_A0755 - chemotaxis sensory transducer (NCBI), at 886,552 to 888,255 _A0755 Rru_A0756: Rru_A0756 - hypothetical protein (NCBI), at 888,280 to 889,590 _A0756 Rru_A0757: Rru_A0757 - Isochorismatase hydrolase (NCBI), at 889,755 to 890,321 _A0757 Rru_A0758: Rru_A0758 - Transcriptional Regulator, AraC family (NCBI), at 890,318 to 891,334 _A0758 Position (kb) 888 889 890Strain fitness (log2 ratio) -1 0 1 2at 887.661 kb on + strand, within Rru_A0755at 887.661 kb on + strand, within Rru_A0755at 887.661 kb on + strand, within Rru_A0755at 887.661 kb on + strand, within Rru_A0755at 887.661 kb on + strand, within Rru_A0755at 887.662 kb on - strand, within Rru_A0755at 887.662 kb on - strand, within Rru_A0755at 887.874 kb on + strand, within Rru_A0755at 888.198 kb on + strandat 888.199 kb on - strandat 888.505 kb on + strand, within Rru_A0756at 888.505 kb on + strand, within Rru_A0756at 889.021 kb on + strand, within Rru_A0756at 889.201 kb on + strand, within Rru_A0756at 889.225 kb on + strand, within Rru_A0756at 889.225 kb on + strand, within Rru_A0756at 889.225 kb on + strand, within Rru_A0756at 889.225 kb on + strand, within Rru_A0756at 889.226 kb on - strand, within Rru_A0756at 889.226 kb on - strand, within Rru_A0756at 889.235 kb on + strand, within Rru_A0756at 889.235 kb on + strand, within Rru_A0756at 889.235 kb on + strand, within Rru_A0756at 889.235 kb on + strand, within Rru_A0756at 889.235 kb on + strand, within Rru_A0756at 889.235 kb on + strand, within Rru_A0756at 889.236 kb on - strand, within Rru_A0756at 889.236 kb on - strand, within Rru_A0756at 889.236 kb on - strand, within Rru_A0756at 889.236 kb on - strand, within Rru_A0756at 889.539 kb on + strandat 889.540 kb on - strandat 889.540 kb on - strandat 889.584 kb on + strandat 889.584 kb on + strandat 889.585 kb on - strandat 890.357 kb on + strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.446 kb on - strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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887,661 + Rru_A0755 0.65 +0.8
887,661 + Rru_A0755 0.65 +1.6
887,661 + Rru_A0755 0.65 -0.0
887,661 + Rru_A0755 0.65 -0.0
887,661 + Rru_A0755 0.65 +0.9
887,662 - Rru_A0755 0.65 +1.9
887,662 - Rru_A0755 0.65 +1.9
887,874 + Rru_A0755 0.78 +2.2
888,198 + -0.0
888,199 - +1.3
888,505 + Rru_A0756 0.17 +1.4
888,505 + Rru_A0756 0.17 -1.6
889,021 + Rru_A0756 0.57 -0.0
889,201 + Rru_A0756 0.70 -0.0
889,225 + Rru_A0756 0.72 -0.6
889,225 + Rru_A0756 0.72 -0.0
889,225 + Rru_A0756 0.72 -0.2
889,225 + Rru_A0756 0.72 +1.5
889,226 - Rru_A0756 0.72 -0.0
889,226 - Rru_A0756 0.72 +0.2
889,235 + Rru_A0756 0.73 +0.5
889,235 + Rru_A0756 0.73 +0.2
889,235 + Rru_A0756 0.73 +0.7
889,235 + Rru_A0756 0.73 +0.7
889,235 + Rru_A0756 0.73 +0.9
889,235 + Rru_A0756 0.73 +1.0
889,236 - Rru_A0756 0.73 -0.0
889,236 - Rru_A0756 0.73 +1.1
889,236 - Rru_A0756 0.73 -0.0
889,236 - Rru_A0756 0.73 -0.0
889,539 + -0.0
889,540 - -0.0
889,540 - -0.0
889,584 + -1.0
889,584 + +0.3
889,585 - +2.4
890,357 + -0.0
890,358 - +1.0
890,358 - -0.0
890,358 - -0.0
890,358 - -0.0
890,358 - -0.0
890,358 - -1.6
890,446 - Rru_A0758 0.13 -0.0
890,462 + Rru_A0758 0.14 +0.8
890,462 + Rru_A0758 0.14 +0.7
890,462 + Rru_A0758 0.14 -0.0
890,462 + Rru_A0758 0.14 +1.0
890,462 + Rru_A0758 0.14 +1.5
890,463 - Rru_A0758 0.14 +0.7
890,463 - Rru_A0758 0.14 +1.0
890,463 - Rru_A0758 0.14 +0.8
890,463 - Rru_A0758 0.14 +0.4
890,463 - Rru_A0758 0.14 +0.8
890,463 - Rru_A0758 0.14 +1.2

Or see this region's nucleotide sequence