Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0754 and Rru_A0755 are separated by 63 nucleotides Rru_A0755 and Rru_A0756 are separated by 24 nucleotides
Rru_A0754: Rru_A0754 - hypothetical protein (NCBI), at 885,418 to 886,488
_A0754
Rru_A0755: Rru_A0755 - chemotaxis sensory transducer (NCBI), at 886,552 to 888,255
_A0755
Rru_A0756: Rru_A0756 - hypothetical protein (NCBI), at 888,280 to 889,590
_A0756
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -1
0
1
2 at 885.598 kb on + strand, within Rru_A0754 at 885.598 kb on + strand, within Rru_A0754 at 885.598 kb on + strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 886.015 kb on + strand, within Rru_A0754 at 886.015 kb on + strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.093 kb on - strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.420 kb on + strand at 886.420 kb on + strand at 886.421 kb on - strand at 886.421 kb on - strand at 886.562 kb on + strand at 886.563 kb on - strand at 886.671 kb on + strand at 886.671 kb on + strand at 886.698 kb on + strand at 886.699 kb on - strand at 886.715 kb on - strand at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.662 kb on - strand, within Rru_A0755 at 887.662 kb on - strand, within Rru_A0755 at 887.874 kb on + strand, within Rru_A0755 at 888.198 kb on + strand at 888.199 kb on - strand at 888.505 kb on + strand, within Rru_A0756 at 888.505 kb on + strand, within Rru_A0756 at 889.021 kb on + strand, within Rru_A0756 at 889.201 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.226 kb on - strand, within Rru_A0756 at 889.226 kb on - strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 885,598 + Rru_A0754 0.17 +1.5 885,598 + Rru_A0754 0.17 -0.4 885,598 + Rru_A0754 0.17 +1.2 885,670 - Rru_A0754 0.24 -0.0 885,670 - Rru_A0754 0.24 +1.7 885,670 - Rru_A0754 0.24 +1.4 886,015 + Rru_A0754 0.56 -1.0 886,015 + Rru_A0754 0.56 +0.4 886,016 - Rru_A0754 0.56 -0.0 886,016 - Rru_A0754 0.56 -0.0 886,016 - Rru_A0754 0.56 +1.4 886,093 - Rru_A0754 0.63 +0.8 886,201 + Rru_A0754 0.73 +0.6 886,201 + Rru_A0754 0.73 -0.0 886,201 + Rru_A0754 0.73 -0.0 886,201 + Rru_A0754 0.73 -0.0 886,420 + -1.0 886,420 + +1.0 886,421 - +0.8 886,421 - -1.0 886,562 + +1.6 886,563 - -0.0 886,671 + +1.8 886,671 + -0.0 886,698 + +1.5 886,699 - +2.1 886,715 - -0.0 887,661 + Rru_A0755 0.65 +0.8 887,661 + Rru_A0755 0.65 +1.6 887,661 + Rru_A0755 0.65 -0.0 887,661 + Rru_A0755 0.65 -0.0 887,661 + Rru_A0755 0.65 +0.9 887,662 - Rru_A0755 0.65 +1.9 887,662 - Rru_A0755 0.65 +1.9 887,874 + Rru_A0755 0.78 +2.2 888,198 + -0.0 888,199 - +1.3 888,505 + Rru_A0756 0.17 +1.4 888,505 + Rru_A0756 0.17 -1.6 889,021 + Rru_A0756 0.57 -0.0 889,201 + Rru_A0756 0.70 -0.0 889,225 + Rru_A0756 0.72 -0.6 889,225 + Rru_A0756 0.72 -0.0 889,225 + Rru_A0756 0.72 -0.2 889,225 + Rru_A0756 0.72 +1.5 889,226 - Rru_A0756 0.72 -0.0 889,226 - Rru_A0756 0.72 +0.2 889,235 + Rru_A0756 0.73 +0.5 889,235 + Rru_A0756 0.73 +0.2 889,235 + Rru_A0756 0.73 +0.7 889,235 + Rru_A0756 0.73 +0.7 889,235 + Rru_A0756 0.73 +0.9 889,235 + Rru_A0756 0.73 +1.0 889,236 - Rru_A0756 0.73 -0.0 889,236 - Rru_A0756 0.73 +1.1 889,236 - Rru_A0756 0.73 -0.0 889,236 - Rru_A0756 0.73 -0.0
Or see this region's nucleotide sequence