Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0751

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0750 and Rru_A0751 overlap by 4 nucleotidesRru_A0751 and Rru_A0752 are separated by 585 nucleotides Rru_A0750: Rru_A0750 - Peptide chain release factor 1 (NCBI), at 879,011 to 880,075 _A0750 Rru_A0751: Rru_A0751 - Modification methylase HemK (NCBI), at 880,072 to 881,049 _A0751 Rru_A0752: Rru_A0752 - hypothetical protein (NCBI), at 881,635 to 882,582 _A0752 Position (kb) 880 881 882Strain fitness (log2 ratio) -1 0 1 2at 880.142 kb on + strandat 880.143 kb on - strandat 880.995 kb on + strandat 881.103 kb on + strandat 881.142 kb on + strandat 881.378 kb on + strandat 881.379 kb on - strandat 881.549 kb on + strandat 882.022 kb on + strand, within Rru_A0752at 882.023 kb on - strand, within Rru_A0752at 882.049 kb on + strand, within Rru_A0752

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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880,142 + +1.1
880,143 - +0.2
880,995 + +2.4
881,103 + -0.0
881,142 + -0.0
881,378 + +1.1
881,379 - -0.0
881,549 + -0.6
882,022 + Rru_A0752 0.41 -0.0
882,023 - Rru_A0752 0.41 -0.8
882,049 + Rru_A0752 0.44 -0.0

Or see this region's nucleotide sequence