Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0733 and Rru_A0734 are separated by 114 nucleotides Rru_A0734 and Rru_A0735 are separated by 28 nucleotides Rru_A0735 and Rru_A0736 are separated by 23 nucleotides
Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933
_A0733
Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503
_A0734
Rru_A0735: Rru_A0735 - Sugar fermentation stimulation protein (NCBI), at 861,532 to 862,269
_A0735
Rru_A0736: Rru_A0736 - hypothetical protein (NCBI), at 862,293 to 863,219
_A0736
Position (kb) 861
862
863 Strain fitness (log2 ratio) -1
0
1
2 at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 861.033 kb on + strand at 861.034 kb on - strand at 861.108 kb on + strand, within Rru_A0734 at 861.204 kb on + strand, within Rru_A0734 at 861.371 kb on + strand, within Rru_A0734 at 861.371 kb on + strand, within Rru_A0734 at 861.371 kb on + strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.374 kb on - strand, within Rru_A0734 at 861.374 kb on - strand, within Rru_A0734 at 861.374 kb on - strand, within Rru_A0734 at 861.425 kb on - strand, within Rru_A0734 at 861.605 kb on + strand at 861.606 kb on - strand, within Rru_A0735 at 861.606 kb on - strand, within Rru_A0735 at 861.651 kb on - strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.711 kb on - strand, within Rru_A0735 at 861.711 kb on - strand, within Rru_A0735 at 861.857 kb on + strand, within Rru_A0735 at 861.857 kb on + strand, within Rru_A0735 at 861.857 kb on + strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 862.044 kb on - strand, within Rru_A0735 at 862.076 kb on + strand, within Rru_A0735 at 862.076 kb on + strand, within Rru_A0735 at 862.076 kb on + strand, within Rru_A0735 at 862.076 kb on + strand, within Rru_A0735 at 862.076 kb on + strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.077 kb on - strand, within Rru_A0735 at 862.223 kb on + strand at 862.223 kb on + strand at 862.224 kb on - strand at 863.229 kb on + strand at 863.230 kb on - strand at 863.230 kb on - strand at 863.230 kb on - strand at 863.232 kb on - strand at 863.232 kb on - strand at 863.232 kb on - strand at 863.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 860,975 + +0.2 860,975 + +0.4 860,975 + -0.0 860,975 + +0.1 860,975 + +0.5 860,975 + +0.3 860,975 + -0.4 860,975 + -0.0 860,975 + -0.0 860,977 + -0.0 860,977 + +0.5 860,977 + -0.0 860,977 + +0.1 860,977 + -0.0 860,977 + -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -1.6 860,978 - -0.0 860,978 - -0.0 861,033 + +2.0 861,034 - +1.1 861,108 + Rru_A0734 0.13 +1.3 861,204 + Rru_A0734 0.34 -0.0 861,371 + Rru_A0734 0.71 +0.6 861,371 + Rru_A0734 0.71 -0.0 861,371 + Rru_A0734 0.71 +1.1 861,372 - Rru_A0734 0.71 +2.4 861,372 - Rru_A0734 0.71 -1.0 861,372 - Rru_A0734 0.71 +0.9 861,372 - Rru_A0734 0.71 -0.0 861,372 - Rru_A0734 0.71 -0.0 861,372 - Rru_A0734 0.71 -0.0 861,374 - Rru_A0734 0.71 +1.8 861,374 - Rru_A0734 0.71 -0.0 861,374 - Rru_A0734 0.71 +1.6 861,425 - Rru_A0734 0.83 +1.2 861,605 + -0.3 861,606 - Rru_A0735 0.10 +1.1 861,606 - Rru_A0735 0.10 -0.0 861,651 - Rru_A0735 0.16 +1.2 861,710 + Rru_A0735 0.24 -0.8 861,710 + Rru_A0735 0.24 +0.8 861,710 + Rru_A0735 0.24 +1.6 861,710 + Rru_A0735 0.24 +1.3 861,711 - Rru_A0735 0.24 +1.2 861,711 - Rru_A0735 0.24 -0.0 861,857 + Rru_A0735 0.44 -0.0 861,857 + Rru_A0735 0.44 -0.0 861,857 + Rru_A0735 0.44 +0.4 861,858 - Rru_A0735 0.44 +1.3 861,858 - Rru_A0735 0.44 -0.0 861,858 - Rru_A0735 0.44 -0.0 861,858 - Rru_A0735 0.44 -0.0 861,858 - Rru_A0735 0.44 +1.6 862,044 - Rru_A0735 0.69 +0.5 862,076 + Rru_A0735 0.74 +1.4 862,076 + Rru_A0735 0.74 +1.4 862,076 + Rru_A0735 0.74 -0.0 862,076 + Rru_A0735 0.74 +0.2 862,076 + Rru_A0735 0.74 +0.3 862,077 - Rru_A0735 0.74 +1.0 862,077 - Rru_A0735 0.74 -0.0 862,077 - Rru_A0735 0.74 -0.0 862,077 - Rru_A0735 0.74 +0.2 862,077 - Rru_A0735 0.74 +1.4 862,077 - Rru_A0735 0.74 -0.0 862,077 - Rru_A0735 0.74 +1.2 862,223 + -1.6 862,223 + -0.0 862,224 - -0.0 863,229 + -0.0 863,230 - +1.1 863,230 - -0.0 863,230 - -0.0 863,232 - +0.9 863,232 - +1.3 863,232 - -0.0 863,232 - +0.2
Or see this region's nucleotide sequence