Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0667 and Rru_A0668 are separated by 118 nucleotides Rru_A0668 and Rru_A0669 overlap by 4 nucleotides Rru_A0669 and Rru_A0670 are separated by 170 nucleotides
Rru_A0667: Rru_A0667 - Nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferase (NCBI), at 790,447 to 791,454
_A0667
Rru_A0668: Rru_A0668 - Cobalamin-5-phosphate synthase CobS (NCBI), at 791,573 to 792,358
_A0668
Rru_A0669: Rru_A0669 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 792,355 to 792,993
_A0669
Rru_A0670: Rru_A0670 - Cobalbumin biosynthesis enzyme (NCBI), at 793,164 to 793,736
_A0670
Position (kb) 791
792
793 Strain fitness (log2 ratio) -2
-1
0
1 at 790.925 kb on + strand, within Rru_A0667 at 790.926 kb on - strand, within Rru_A0667 at 791.026 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.476 kb on + strand at 791.476 kb on + strand at 791.477 kb on - strand at 791.506 kb on - strand at 791.565 kb on + strand at 791.565 kb on + strand at 791.565 kb on + strand at 791.566 kb on - strand at 791.566 kb on - strand at 791.671 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 793.296 kb on + strand, within Rru_A0670 at 793.296 kb on + strand, within Rru_A0670 at 793.297 kb on - strand, within Rru_A0670
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 790,925 + Rru_A0667 0.47 +0.4 790,926 - Rru_A0667 0.48 -0.0 791,026 - Rru_A0667 0.57 -0.0 791,029 - Rru_A0667 0.58 +1.6 791,029 - Rru_A0667 0.58 -0.0 791,476 + -0.0 791,476 + -0.0 791,477 - -0.0 791,506 - -0.0 791,565 + +1.0 791,565 + -0.0 791,565 + -0.0 791,566 - +0.6 791,566 - -0.0 791,671 + Rru_A0668 0.12 -0.0 792,233 + Rru_A0668 0.84 -2.1 792,233 + Rru_A0668 0.84 -2.5 792,234 - Rru_A0668 0.84 -0.0 792,234 - Rru_A0668 0.84 -0.0 792,234 - Rru_A0668 0.84 -1.0 792,986 + -0.2 792,986 + -0.0 792,986 + -0.0 792,986 + -0.0 792,986 + -0.0 792,987 - -0.6 792,987 - +0.9 792,987 - +0.3 792,991 + -0.0 792,991 + +0.7 792,991 + -0.0 792,991 + -0.0 793,296 + Rru_A0670 0.23 -1.6 793,296 + Rru_A0670 0.23 -1.0 793,297 - Rru_A0670 0.23 -0.6
Or see this region's nucleotide sequence