Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0656 and Rru_A0657 are separated by 10 nucleotides Rru_A0657 and Rru_A0658 are separated by 101 nucleotides Rru_A0658 and Rru_A0659 overlap by 58 nucleotides
Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472
_A0656
Rru_A0657: Rru_A0657 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 779,483 to 780,094
_A0657
Rru_A0658: Rru_A0658 - Transcriptional Regulator, LysR family (NCBI), at 780,196 to 781,128
_A0658
Rru_A0659: Rru_A0659 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation (NCBI), at 781,071 to 783,371
_A0659
Position (kb) 780
781
782 Strain fitness (log2 ratio) -1
0
1 at 779.392 kb on + strand at 779.392 kb on + strand at 779.713 kb on - strand, within Rru_A0657 at 779.713 kb on - strand, within Rru_A0657 at 779.713 kb on - strand, within Rru_A0657 at 780.122 kb on - strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.136 kb on - strand at 780.136 kb on - strand at 780.158 kb on + strand at 780.158 kb on + strand at 780.158 kb on + strand at 780.162 kb on + strand at 780.182 kb on + strand at 780.191 kb on + strand at 780.360 kb on + strand, within Rru_A0658 at 780.361 kb on - strand, within Rru_A0658 at 780.396 kb on + strand, within Rru_A0658 at 780.397 kb on - strand, within Rru_A0658 at 780.599 kb on - strand, within Rru_A0658 at 780.736 kb on + strand, within Rru_A0658 at 780.999 kb on + strand, within Rru_A0658 at 781.000 kb on - strand, within Rru_A0658 at 781.000 kb on - strand, within Rru_A0658 at 781.091 kb on + strand at 781.091 kb on + strand at 781.092 kb on - strand at 781.195 kb on + strand at 781.195 kb on + strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.325 kb on + strand, within Rru_A0659 at 781.399 kb on + strand, within Rru_A0659 at 781.400 kb on - strand, within Rru_A0659 at 781.400 kb on - strand, within Rru_A0659 at 781.414 kb on + strand, within Rru_A0659 at 781.455 kb on - strand, within Rru_A0659 at 781.491 kb on + strand, within Rru_A0659 at 781.492 kb on - strand, within Rru_A0659 at 781.709 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.930 kb on + strand, within Rru_A0659 at 781.931 kb on - strand, within Rru_A0659
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 779,392 + +0.2 779,392 + +1.0 779,713 - Rru_A0657 0.38 -0.0 779,713 - Rru_A0657 0.38 +1.3 779,713 - Rru_A0657 0.38 -1.0 780,122 - -1.6 780,135 + -0.0 780,135 + -0.0 780,135 + -0.0 780,135 + +0.7 780,135 + -0.0 780,135 + +0.3 780,136 - -0.0 780,136 - +1.7 780,158 + -1.0 780,158 + +0.2 780,158 + +0.8 780,162 + +0.2 780,182 + +1.2 780,191 + +1.4 780,360 + Rru_A0658 0.18 -0.0 780,361 - Rru_A0658 0.18 +1.5 780,396 + Rru_A0658 0.21 -0.0 780,397 - Rru_A0658 0.22 +1.7 780,599 - Rru_A0658 0.43 +0.5 780,736 + Rru_A0658 0.58 -0.0 780,999 + Rru_A0658 0.86 +1.2 781,000 - Rru_A0658 0.86 +1.1 781,000 - Rru_A0658 0.86 -0.0 781,091 + +0.3 781,091 + +0.4 781,092 - -0.0 781,195 + -1.6 781,195 + +0.9 781,196 - +1.7 781,196 - -0.0 781,196 - +0.3 781,325 + Rru_A0659 0.11 +0.9 781,399 + Rru_A0659 0.14 +0.9 781,400 - Rru_A0659 0.14 +1.0 781,400 - Rru_A0659 0.14 +1.7 781,414 + Rru_A0659 0.15 +1.7 781,455 - Rru_A0659 0.17 -0.0 781,491 + Rru_A0659 0.18 +1.0 781,492 - Rru_A0659 0.18 +1.7 781,709 + Rru_A0659 0.28 +1.4 781,930 + Rru_A0659 0.37 +1.7 781,930 + Rru_A0659 0.37 -0.0 781,930 + Rru_A0659 0.37 -0.0 781,930 + Rru_A0659 0.37 -0.0 781,931 - Rru_A0659 0.37 +0.8
Or see this region's nucleotide sequence