Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0645

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0644 and Rru_A0645 are separated by 166 nucleotidesRru_A0645 and Rru_A0646 are separated by 87 nucleotides Rru_A0644: Rru_A0644 - hypothetical protein (NCBI), at 765,588 to 766,616 _A0644 Rru_A0645: Rru_A0645 - Ribose-phosphate pyrophosphokinase (NCBI), at 766,783 to 767,715 _A0645 Rru_A0646: Rru_A0646 - Phosphoribosylamine--glycine ligase (NCBI), at 767,803 to 769,113 _A0646 Position (kb) 766 767 768Strain fitness (log2 ratio) -1 0 1at 765.902 kb on - strand, within Rru_A0644at 765.902 kb on - strand, within Rru_A0644at 766.535 kb on - strandat 766.614 kb on + strandat 766.649 kb on + strandat 766.764 kb on + strandat 767.509 kb on + strand, within Rru_A0645

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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765,902 - Rru_A0644 0.31 -1.0
765,902 - Rru_A0644 0.31 -0.0
766,535 - -1.6
766,614 + +0.7
766,649 + +1.0
766,764 + +0.3
767,509 + Rru_A0645 0.78 +1.2

Or see this region's nucleotide sequence