Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0632 and Rru_A0633 are separated by 12 nucleotides Rru_A0633 and Rru_A0634 are separated by 11 nucleotides
Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501
_A0632
Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143
_A0633
Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969
_A0634
Position (kb) 753
754
755 Strain fitness (log2 ratio) -1
0
1
2 at 753.048 kb on + strand, within Rru_A0632 at 753.049 kb on - strand, within Rru_A0632 at 753.156 kb on + strand, within Rru_A0632 at 753.156 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.433 kb on + strand at 753.433 kb on + strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.554 kb on + strand at 753.554 kb on + strand at 753.554 kb on + strand at 753.555 kb on - strand at 753.555 kb on - strand at 753.661 kb on - strand, within Rru_A0633 at 753.661 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.791 kb on + strand, within Rru_A0633 at 753.792 kb on - strand, within Rru_A0633 at 753.794 kb on + strand, within Rru_A0633 at 753.795 kb on - strand, within Rru_A0633 at 753.795 kb on - strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.088 kb on + strand at 754.088 kb on + strand at 754.088 kb on + strand at 754.089 kb on - strand at 754.089 kb on - strand at 754.089 kb on - strand at 754.156 kb on + strand at 754.235 kb on + strand at 754.741 kb on + strand, within Rru_A0634 at 754.741 kb on + strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 753,048 + Rru_A0632 0.79 +0.5 753,049 - Rru_A0632 0.80 +1.6 753,156 + Rru_A0632 0.84 +0.6 753,156 + Rru_A0632 0.84 +0.7 753,166 + Rru_A0632 0.85 +1.6 753,166 + Rru_A0632 0.85 +0.7 753,166 + Rru_A0632 0.85 +0.7 753,433 + -0.0 753,433 + +1.1 753,434 - +2.7 753,434 - -0.0 753,434 - +2.1 753,434 - +0.8 753,434 - +0.9 753,434 - +1.3 753,434 - -0.0 753,434 - -0.0 753,434 - +1.1 753,554 + +1.3 753,554 + +1.6 753,554 + +2.1 753,555 - +0.4 753,555 - +0.6 753,661 - Rru_A0633 0.23 +2.6 753,661 - Rru_A0633 0.23 +1.3 753,663 - Rru_A0633 0.24 +1.9 753,663 - Rru_A0633 0.24 -0.0 753,663 - Rru_A0633 0.24 +1.1 753,791 + Rru_A0633 0.44 +1.5 753,792 - Rru_A0633 0.44 -0.0 753,794 + Rru_A0633 0.44 +1.4 753,795 - Rru_A0633 0.45 -0.0 753,795 - Rru_A0633 0.45 +0.8 754,051 + Rru_A0633 0.85 +1.1 754,051 + Rru_A0633 0.85 +0.4 754,051 + Rru_A0633 0.85 +1.6 754,051 + Rru_A0633 0.85 -0.0 754,088 + +0.3 754,088 + -0.0 754,088 + -0.0 754,089 - -1.0 754,089 - +1.3 754,089 - -0.0 754,156 + +1.8 754,235 + -0.0 754,741 + Rru_A0634 0.32 +0.8 754,741 + Rru_A0634 0.32 +2.6 754,742 - Rru_A0634 0.32 +1.6 754,742 - Rru_A0634 0.32 -1.0 754,742 - Rru_A0634 0.32 +0.6 754,742 - Rru_A0634 0.32 +1.6
Or see this region's nucleotide sequence