Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0599

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0598 and Rru_A0599 are separated by 194 nucleotidesRru_A0599 and Rru_A0600 are separated by 71 nucleotides Rru_A0598: Rru_A0598 - phosphate ABC transporter, periplasmic binding protein (NCBI), at 710,794 to 711,822 _A0598 Rru_A0599: Rru_A0599 - Phosphate ABC transporter, permease protein PstC (NCBI), at 712,017 to 713,414 _A0599 Rru_A0600: Rru_A0600 - Phosphate transport system permease protein 2 (NCBI), at 713,486 to 714,766 _A0600 Position (kb) 712 713 714Strain fitness (log2 ratio) -1 0 1at 711.820 kb on + strandat 711.820 kb on + strandat 712.798 kb on - strand, within Rru_A0599at 712.798 kb on - strand, within Rru_A0599at 712.800 kb on - strand, within Rru_A0599at 713.407 kb on - strandat 714.123 kb on - strand, within Rru_A0600

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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711,820 + -0.2
711,820 + -0.0
712,798 - Rru_A0599 0.56 -0.0
712,798 - Rru_A0599 0.56 -0.0
712,800 - Rru_A0599 0.56 -0.0
713,407 - -0.0
714,123 - Rru_A0600 0.50 -0.0

Or see this region's nucleotide sequence