Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0591

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0589 and Rru_A0590 overlap by 1 nucleotidesRru_A0590 and Rru_A0591 overlap by 4 nucleotidesRru_A0591 and Rru_A0592 are separated by 179 nucleotides Rru_A0589: Rru_A0589 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 699,658 to 700,650 _A0589 Rru_A0590: Rru_A0590 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 700,650 to 701,558 _A0590 Rru_A0591: Rru_A0591 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 701,555 to 702,481 _A0591 Rru_A0592: Rru_A0592 - extracellular solute-binding protein, family 5 (NCBI), at 702,661 to 704,298 _A0592 Position (kb) 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2 3at 700.885 kb on + strand, within Rru_A0590at 700.885 kb on + strand, within Rru_A0590at 700.886 kb on - strand, within Rru_A0590at 700.886 kb on - strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.125 kb on + strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.126 kb on - strand, within Rru_A0590at 701.194 kb on + strand, within Rru_A0590at 701.194 kb on + strand, within Rru_A0590at 701.263 kb on + strand, within Rru_A0590at 701.264 kb on - strand, within Rru_A0590at 701.264 kb on - strand, within Rru_A0590at 701.356 kb on + strand, within Rru_A0590at 701.356 kb on + strand, within Rru_A0590at 701.357 kb on - strand, within Rru_A0590at 701.357 kb on - strand, within Rru_A0590at 701.458 kb on + strand, within Rru_A0590at 701.458 kb on + strand, within Rru_A0590at 701.459 kb on - strand, within Rru_A0590at 701.459 kb on - strand, within Rru_A0590at 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.592 kb on + strandat 701.593 kb on - strandat 701.593 kb on - strandat 701.593 kb on - strandat 701.697 kb on + strand, within Rru_A0591at 701.697 kb on + strand, within Rru_A0591at 701.697 kb on + strand, within Rru_A0591at 701.698 kb on - strand, within Rru_A0591at 701.698 kb on - strand, within Rru_A0591at 701.778 kb on + strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.917 kb on + strand, within Rru_A0591at 701.917 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.920 kb on - strand, within Rru_A0591at 701.920 kb on - strand, within Rru_A0591at 701.964 kb on + strand, within Rru_A0591at 701.965 kb on - strand, within Rru_A0591at 701.970 kb on - strand, within Rru_A0591at 702.155 kb on + strand, within Rru_A0591at 702.294 kb on + strand, within Rru_A0591at 702.295 kb on - strand, within Rru_A0591at 702.322 kb on + strand, within Rru_A0591at 702.322 kb on + strand, within Rru_A0591at 702.323 kb on - strand, within Rru_A0591at 702.324 kb on + strand, within Rru_A0591at 702.325 kb on - strand, within Rru_A0591at 702.325 kb on - strand, within Rru_A0591at 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.656 kb on - strandat 702.656 kb on - strandat 702.663 kb on - strandat 702.663 kb on - strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.755 kb on + strandat 702.756 kb on - strandat 702.759 kb on - strandat 702.759 kb on - strandat 702.869 kb on + strand, within Rru_A0592at 702.870 kb on - strand, within Rru_A0592at 702.870 kb on - strand, within Rru_A0592at 702.951 kb on - strand, within Rru_A0592at 703.113 kb on - strand, within Rru_A0592at 703.113 kb on - strand, within Rru_A0592at 703.113 kb on - strand, within Rru_A0592at 703.235 kb on + strand, within Rru_A0592at 703.235 kb on + strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.385 kb on + strand, within Rru_A0592at 703.385 kb on + strand, within Rru_A0592at 703.385 kb on + strand, within Rru_A0592at 703.386 kb on - strand, within Rru_A0592at 703.386 kb on - strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.403 kb on + strand, within Rru_A0592at 703.479 kb on + strand, within Rru_A0592at 703.480 kb on - strand, within Rru_A0592

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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700,885 + Rru_A0590 0.26 +1.4
700,885 + Rru_A0590 0.26 -0.0
700,886 - Rru_A0590 0.26 -0.0
700,886 - Rru_A0590 0.26 +1.0
701,125 + Rru_A0590 0.52 +0.6
701,125 + Rru_A0590 0.52 -0.0
701,125 + Rru_A0590 0.52 +1.0
701,125 + Rru_A0590 0.52 +0.7
701,125 + Rru_A0590 0.52 +1.0
701,126 - Rru_A0590 0.52 +0.9
701,126 - Rru_A0590 0.52 +1.0
701,126 - Rru_A0590 0.52 +0.4
701,126 - Rru_A0590 0.52 -0.0
701,194 + Rru_A0590 0.60 +0.8
701,194 + Rru_A0590 0.60 -0.5
701,263 + Rru_A0590 0.67 +1.3
701,264 - Rru_A0590 0.68 -0.0
701,264 - Rru_A0590 0.68 -0.0
701,356 + Rru_A0590 0.78 +1.1
701,356 + Rru_A0590 0.78 -0.0
701,357 - Rru_A0590 0.78 +0.9
701,357 - Rru_A0590 0.78 +1.0
701,458 + Rru_A0590 0.89 +1.3
701,458 + Rru_A0590 0.89 -0.0
701,459 - Rru_A0590 0.89 +0.8
701,459 - Rru_A0590 0.89 +1.0
701,592 + +1.2
701,592 + +1.1
701,592 + +1.1
701,592 + -0.1
701,592 + +1.4
701,592 + +1.2
701,592 + -0.0
701,592 + -0.0
701,593 - -0.0
701,593 - -0.0
701,593 - +1.2
701,697 + Rru_A0591 0.15 +0.7
701,697 + Rru_A0591 0.15 -2.6
701,697 + Rru_A0591 0.15 -0.0
701,698 - Rru_A0591 0.15 -1.0
701,698 - Rru_A0591 0.15 +1.7
701,778 + Rru_A0591 0.24 -0.0
701,779 - Rru_A0591 0.24 +1.5
701,779 - Rru_A0591 0.24 +0.6
701,779 - Rru_A0591 0.24 +0.4
701,880 - Rru_A0591 0.35 -0.9
701,880 - Rru_A0591 0.35 +0.6
701,880 - Rru_A0591 0.35 -2.0
701,917 + Rru_A0591 0.39 +1.1
701,917 + Rru_A0591 0.39 -0.0
701,919 + Rru_A0591 0.39 +0.9
701,919 + Rru_A0591 0.39 -1.0
701,919 + Rru_A0591 0.39 +1.4
701,920 - Rru_A0591 0.39 -0.0
701,920 - Rru_A0591 0.39 -0.0
701,964 + Rru_A0591 0.44 +0.7
701,965 - Rru_A0591 0.44 +0.6
701,970 - Rru_A0591 0.45 +0.8
702,155 + Rru_A0591 0.65 -0.0
702,294 + Rru_A0591 0.80 -1.0
702,295 - Rru_A0591 0.80 -1.0
702,322 + Rru_A0591 0.83 +1.2
702,322 + Rru_A0591 0.83 -0.0
702,323 - Rru_A0591 0.83 -0.0
702,324 + Rru_A0591 0.83 +0.8
702,325 - Rru_A0591 0.83 -0.0
702,325 - Rru_A0591 0.83 -0.0
702,476 + +0.2
702,476 + +1.7
702,476 + +1.6
702,476 + -1.0
702,476 + -0.0
702,477 - +1.3
702,477 - -0.0
702,477 - +0.6
702,477 - -0.0
702,656 - +1.0
702,656 - +1.1
702,663 - +0.5
702,663 - +1.0
702,752 + +2.9
702,752 + +1.1
702,753 - -0.0
702,753 - -0.0
702,755 + +1.0
702,756 - -0.0
702,759 - -0.0
702,759 - -0.0
702,869 + Rru_A0592 0.13 -0.0
702,870 - Rru_A0592 0.13 -0.0
702,870 - Rru_A0592 0.13 -0.0
702,951 - Rru_A0592 0.18 -0.0
703,113 - Rru_A0592 0.28 -1.0
703,113 - Rru_A0592 0.28 +1.2
703,113 - Rru_A0592 0.28 +0.7
703,235 + Rru_A0592 0.35 -1.0
703,235 + Rru_A0592 0.35 +1.4
703,236 - Rru_A0592 0.35 -0.0
703,236 - Rru_A0592 0.35 -0.0
703,236 - Rru_A0592 0.35 +0.6
703,236 - Rru_A0592 0.35 -0.0
703,236 - Rru_A0592 0.35 -1.6
703,385 + Rru_A0592 0.44 +0.8
703,385 + Rru_A0592 0.44 -0.0
703,385 + Rru_A0592 0.44 +2.8
703,386 - Rru_A0592 0.44 +1.1
703,386 - Rru_A0592 0.44 +1.4
703,391 + Rru_A0592 0.45 +0.6
703,391 + Rru_A0592 0.45 +0.9
703,391 + Rru_A0592 0.45 +0.1
703,391 + Rru_A0592 0.45 +0.7
703,391 + Rru_A0592 0.45 -0.0
703,391 + Rru_A0592 0.45 +1.2
703,391 + Rru_A0592 0.45 +1.2
703,391 + Rru_A0592 0.45 -0.0
703,391 + Rru_A0592 0.45 +0.7
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 +2.2
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 +0.5
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 +1.9
703,392 - Rru_A0592 0.45 +1.3
703,392 - Rru_A0592 0.45 +0.4
703,392 - Rru_A0592 0.45 +1.5
703,392 - Rru_A0592 0.45 +0.2
703,392 - Rru_A0592 0.45 +1.3
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 -0.0
703,403 + Rru_A0592 0.45 -0.6
703,479 + Rru_A0592 0.50 +0.3
703,480 - Rru_A0592 0.50 +1.0

Or see this region's nucleotide sequence