Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0566 and Rru_A0567 are separated by 278 nucleotides Rru_A0567 and Rru_A0568 are separated by 94 nucleotides
Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314
_A0566
Rru_A0567: Rru_A0567 - Peptidase U62, modulator of DNA gyrase (NCBI), at 672,593 to 674,035
_A0567
Rru_A0568: Rru_A0568 - chemotaxis sensory transducer (NCBI), at 674,130 to 676,118
_A0568
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -1
0
1
2 at 671.643 kb on + strand, within Rru_A0566 at 671.644 kb on - strand, within Rru_A0566 at 671.695 kb on + strand, within Rru_A0566 at 671.696 kb on - strand, within Rru_A0566 at 671.825 kb on + strand, within Rru_A0566 at 671.951 kb on + strand, within Rru_A0566 at 672.232 kb on + strand at 672.232 kb on + strand at 672.233 kb on - strand at 672.331 kb on + strand at 672.332 kb on - strand at 672.332 kb on - strand at 672.400 kb on + strand at 672.531 kb on + strand at 672.531 kb on + strand at 672.531 kb on + strand at 672.532 kb on - strand at 672.532 kb on - strand at 672.716 kb on + strand at 672.776 kb on - strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.948 kb on - strand, within Rru_A0567 at 673.574 kb on + strand, within Rru_A0567 at 673.574 kb on + strand, within Rru_A0567 at 673.575 kb on - strand, within Rru_A0567 at 673.643 kb on + strand, within Rru_A0567 at 673.643 kb on + strand, within Rru_A0567 at 673.644 kb on - strand, within Rru_A0567 at 673.644 kb on - strand, within Rru_A0567 at 673.675 kb on + strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.811 kb on + strand, within Rru_A0567 at 673.811 kb on + strand, within Rru_A0567 at 674.075 kb on + strand at 674.075 kb on + strand at 674.075 kb on + strand at 674.076 kb on - strand at 674.253 kb on - strand at 674.622 kb on - strand, within Rru_A0568
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 671,643 + Rru_A0566 0.81 -0.0 671,644 - Rru_A0566 0.81 +1.6 671,695 + Rru_A0566 0.83 -0.0 671,696 - Rru_A0566 0.83 -0.0 671,825 + Rru_A0566 0.86 -0.0 671,951 + Rru_A0566 0.90 +0.9 672,232 + +0.9 672,232 + +1.1 672,233 - +0.7 672,331 + +1.0 672,332 - +2.3 672,332 - +1.0 672,400 + +1.1 672,531 + +1.6 672,531 + -0.0 672,531 + -0.0 672,532 - -0.0 672,532 - -0.0 672,716 + -0.0 672,776 - Rru_A0567 0.13 -0.0 672,947 + Rru_A0567 0.25 -0.0 672,947 + Rru_A0567 0.25 -0.0 672,947 + Rru_A0567 0.25 +0.5 672,947 + Rru_A0567 0.25 -0.0 672,947 + Rru_A0567 0.25 -0.0 672,948 - Rru_A0567 0.25 +0.4 673,574 + Rru_A0567 0.68 -0.0 673,574 + Rru_A0567 0.68 +0.2 673,575 - Rru_A0567 0.68 +1.4 673,643 + Rru_A0567 0.73 +0.6 673,643 + Rru_A0567 0.73 +1.4 673,644 - Rru_A0567 0.73 -0.0 673,644 - Rru_A0567 0.73 +0.3 673,675 + Rru_A0567 0.75 -0.0 673,676 - Rru_A0567 0.75 +0.4 673,676 - Rru_A0567 0.75 -1.0 673,676 - Rru_A0567 0.75 -1.0 673,676 - Rru_A0567 0.75 -0.0 673,676 - Rru_A0567 0.75 +0.8 673,740 - Rru_A0567 0.79 +0.8 673,740 - Rru_A0567 0.79 +0.2 673,740 - Rru_A0567 0.79 +0.7 673,740 - Rru_A0567 0.79 +0.5 673,811 + Rru_A0567 0.84 +1.1 673,811 + Rru_A0567 0.84 +0.6 674,075 + +0.7 674,075 + -0.0 674,075 + -0.0 674,076 - +1.0 674,253 - -0.0 674,622 - Rru_A0568 0.25 +1.9
Or see this region's nucleotide sequence