Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0513

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0512 and Rru_A0513 are separated by 145 nucleotidesRru_A0513 and Rru_A0514 are separated by 239 nucleotides Rru_A0512: Rru_A0512 - hypothetical protein (NCBI), at 606,570 to 607,532 _A0512 Rru_A0513: Rru_A0513 - Protein of unknown function DUF952 (NCBI), at 607,678 to 608,043 _A0513 Rru_A0514: Rru_A0514 - Dihydroorotate dehydrogenase 2 (NCBI), at 608,283 to 609,386 _A0514 Position (kb) 607 608 609Strain fitness (log2 ratio) -2 -1 0 1 2at 606.735 kb on + strand, within Rru_A0512at 606.735 kb on + strand, within Rru_A0512at 606.735 kb on + strand, within Rru_A0512at 606.735 kb on + strand, within Rru_A0512at 606.735 kb on + strand, within Rru_A0512at 606.736 kb on - strand, within Rru_A0512at 606.736 kb on - strand, within Rru_A0512at 606.736 kb on - strand, within Rru_A0512at 606.736 kb on - strand, within Rru_A0512at 606.759 kb on + strand, within Rru_A0512at 606.759 kb on + strand, within Rru_A0512at 606.759 kb on + strand, within Rru_A0512at 606.759 kb on + strand, within Rru_A0512at 606.760 kb on - strand, within Rru_A0512at 606.760 kb on - strand, within Rru_A0512at 606.760 kb on - strand, within Rru_A0512at 606.760 kb on - strand, within Rru_A0512at 606.760 kb on - strand, within Rru_A0512at 606.814 kb on + strand, within Rru_A0512at 606.815 kb on - strand, within Rru_A0512at 606.853 kb on + strand, within Rru_A0512at 606.854 kb on - strand, within Rru_A0512at 607.013 kb on - strand, within Rru_A0512at 607.013 kb on - strand, within Rru_A0512at 607.015 kb on - strand, within Rru_A0512at 607.033 kb on + strand, within Rru_A0512at 607.070 kb on - strand, within Rru_A0512at 607.070 kb on - strand, within Rru_A0512at 607.070 kb on - strand, within Rru_A0512at 607.070 kb on - strand, within Rru_A0512at 607.070 kb on - strand, within Rru_A0512at 607.091 kb on - strand, within Rru_A0512at 607.091 kb on - strand, within Rru_A0512at 607.262 kb on + strand, within Rru_A0512at 607.265 kb on - strand, within Rru_A0512at 607.293 kb on + strand, within Rru_A0512at 607.316 kb on - strand, within Rru_A0512at 607.406 kb on + strand, within Rru_A0512at 607.406 kb on + strand, within Rru_A0512at 607.495 kb on - strandat 607.509 kb on - strandat 607.509 kb on - strandat 607.509 kb on - strandat 607.556 kb on + strandat 607.556 kb on + strandat 607.556 kb on + strandat 607.557 kb on - strandat 607.561 kb on + strandat 607.561 kb on + strandat 607.561 kb on + strandat 607.562 kb on - strandat 607.583 kb on + strandat 607.666 kb on + strandat 607.667 kb on - strandat 607.667 kb on - strandat 607.667 kb on - strandat 607.667 kb on - strandat 607.667 kb on - strandat 607.667 kb on - strandat 607.696 kb on + strandat 607.697 kb on - strandat 607.942 kb on + strand, within Rru_A0513at 607.942 kb on + strand, within Rru_A0513at 607.942 kb on + strand, within Rru_A0513at 607.942 kb on + strand, within Rru_A0513at 607.943 kb on - strand, within Rru_A0513at 607.943 kb on - strand, within Rru_A0513at 607.943 kb on - strand, within Rru_A0513at 607.943 kb on - strand, within Rru_A0513at 608.041 kb on + strandat 608.094 kb on + strandat 608.095 kb on - strandat 608.095 kb on - strandat 608.105 kb on + strandat 608.105 kb on + strandat 608.105 kb on + strandat 608.106 kb on - strandat 608.106 kb on - strandat 608.106 kb on - strandat 608.168 kb on - strandat 608.213 kb on + strandat 608.295 kb on + strandat 608.736 kb on + strand, within Rru_A0514at 608.775 kb on + strand, within Rru_A0514at 608.775 kb on + strand, within Rru_A0514at 608.946 kb on - strand, within Rru_A0514at 608.946 kb on - strand, within Rru_A0514at 608.946 kb on - strand, within Rru_A0514at 609.005 kb on + strand, within Rru_A0514at 609.005 kb on + strand, within Rru_A0514at 609.006 kb on - strand, within Rru_A0514at 609.006 kb on - strand, within Rru_A0514

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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606,735 + Rru_A0512 0.17 +0.0
606,735 + Rru_A0512 0.17 +0.0
606,735 + Rru_A0512 0.17 +0.0
606,735 + Rru_A0512 0.17 -1.0
606,735 + Rru_A0512 0.17 +0.6
606,736 - Rru_A0512 0.17 +1.6
606,736 - Rru_A0512 0.17 +1.7
606,736 - Rru_A0512 0.17 +1.6
606,736 - Rru_A0512 0.17 +1.6
606,759 + Rru_A0512 0.20 +0.0
606,759 + Rru_A0512 0.20 -1.0
606,759 + Rru_A0512 0.20 +0.0
606,759 + Rru_A0512 0.20 +0.0
606,760 - Rru_A0512 0.20 +0.0
606,760 - Rru_A0512 0.20 +0.4
606,760 - Rru_A0512 0.20 +1.4
606,760 - Rru_A0512 0.20 +1.4
606,760 - Rru_A0512 0.20 +1.8
606,814 + Rru_A0512 0.25 +0.0
606,815 - Rru_A0512 0.25 +0.8
606,853 + Rru_A0512 0.29 +1.7
606,854 - Rru_A0512 0.29 +1.0
607,013 - Rru_A0512 0.46 +0.6
607,013 - Rru_A0512 0.46 +1.3
607,015 - Rru_A0512 0.46 +1.7
607,033 + Rru_A0512 0.48 +0.0
607,070 - Rru_A0512 0.52 +1.0
607,070 - Rru_A0512 0.52 +0.0
607,070 - Rru_A0512 0.52 +1.8
607,070 - Rru_A0512 0.52 +0.0
607,070 - Rru_A0512 0.52 +1.1
607,091 - Rru_A0512 0.54 +0.0
607,091 - Rru_A0512 0.54 +0.0
607,262 + Rru_A0512 0.72 +0.0
607,265 - Rru_A0512 0.72 +0.0
607,293 + Rru_A0512 0.75 -1.0
607,316 - Rru_A0512 0.77 +0.0
607,406 + Rru_A0512 0.87 +0.9
607,406 + Rru_A0512 0.87 +1.8
607,495 - -2.0
607,509 - +0.0
607,509 - +0.0
607,509 - +0.0
607,556 + +1.4
607,556 + +0.0
607,556 + +1.5
607,557 - +1.1
607,561 + +1.1
607,561 + -1.0
607,561 + +0.0
607,562 - +0.0
607,583 + +0.0
607,666 + -0.4
607,667 - +0.0
607,667 - +1.0
607,667 - +0.1
607,667 - +0.0
607,667 - +0.0
607,667 - +0.0
607,696 + +1.0
607,697 - +0.0
607,942 + Rru_A0513 0.72 +1.5
607,942 + Rru_A0513 0.72 +1.1
607,942 + Rru_A0513 0.72 +2.1
607,942 + Rru_A0513 0.72 +1.3
607,943 - Rru_A0513 0.72 +0.0
607,943 - Rru_A0513 0.72 +0.0
607,943 - Rru_A0513 0.72 +0.3
607,943 - Rru_A0513 0.72 +0.0
608,041 + +0.9
608,094 + +1.3
608,095 - -1.6
608,095 - +1.6
608,105 + +1.3
608,105 + +0.0
608,105 + +0.0
608,106 - +0.8
608,106 - +0.0
608,106 - -1.0
608,168 - +0.0
608,213 + +0.0
608,295 + +0.0
608,736 + Rru_A0514 0.41 +0.3
608,775 + Rru_A0514 0.45 +0.3
608,775 + Rru_A0514 0.45 +1.0
608,946 - Rru_A0514 0.60 -0.0
608,946 - Rru_A0514 0.60 -0.8
608,946 - Rru_A0514 0.60 +0.0
609,005 + Rru_A0514 0.65 +0.9
609,005 + Rru_A0514 0.65 +0.4
609,006 - Rru_A0514 0.65 +0.0
609,006 - Rru_A0514 0.65 +0.0

Or see this region's nucleotide sequence