Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0482 and Rru_A0483 are separated by 355 nucleotides Rru_A0483 and Rru_A0484 are separated by 7 nucleotides
Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864
_A0482
Rru_A0483: Rru_A0483 - hypothetical protein (NCBI), at 567,220 to 567,480
_A0483
Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483
_A0484
Position (kb) 567
568 Strain fitness (log2 ratio) -1
0
1
2
3 at 566.233 kb on + strand at 566.233 kb on + strand at 566.234 kb on - strand at 566.328 kb on - strand, within Rru_A0482 at 566.434 kb on + strand, within Rru_A0482 at 566.434 kb on + strand, within Rru_A0482 at 566.435 kb on - strand, within Rru_A0482 at 566.444 kb on + strand, within Rru_A0482 at 566.444 kb on + strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.669 kb on - strand, within Rru_A0482 at 566.669 kb on - strand, within Rru_A0482 at 566.707 kb on - strand, within Rru_A0482 at 566.810 kb on + strand at 566.810 kb on + strand at 566.811 kb on - strand at 566.811 kb on - strand at 566.840 kb on + strand at 566.840 kb on + strand at 566.841 kb on - strand at 566.841 kb on - strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.897 kb on - strand at 566.993 kb on - strand at 566.994 kb on + strand at 566.994 kb on + strand at 566.995 kb on - strand at 567.093 kb on + strand at 567.093 kb on + strand at 567.094 kb on - strand at 567.122 kb on - strand at 567.215 kb on - strand at 567.215 kb on - strand at 567.403 kb on + strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.432 kb on + strand, within Rru_A0483 at 567.438 kb on - strand, within Rru_A0483 at 567.630 kb on + strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.957 kb on + strand, within Rru_A0484 at 568.027 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.156 kb on - strand, within Rru_A0484 at 568.218 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.310 kb on - strand, within Rru_A0484 at 568.312 kb on - strand, within Rru_A0484 at 568.414 kb on - strand at 568.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 566,233 + +0.2 566,233 + +0.0 566,234 - +0.6 566,328 - Rru_A0482 0.21 +0.6 566,434 + Rru_A0482 0.37 +1.7 566,434 + Rru_A0482 0.37 +1.1 566,435 - Rru_A0482 0.37 +0.7 566,444 + Rru_A0482 0.38 +1.2 566,444 + Rru_A0482 0.38 +0.0 566,445 - Rru_A0482 0.38 +0.0 566,445 - Rru_A0482 0.38 +0.0 566,445 - Rru_A0482 0.38 -1.0 566,445 - Rru_A0482 0.38 +1.7 566,669 - Rru_A0482 0.71 -1.0 566,669 - Rru_A0482 0.71 +0.0 566,707 - Rru_A0482 0.77 +0.0 566,810 + +1.8 566,810 + +1.6 566,811 - -0.6 566,811 - +2.0 566,840 + +1.0 566,840 + +1.0 566,841 - +0.8 566,841 - +1.4 566,864 + +1.4 566,864 + +1.6 566,864 + +0.0 566,864 + +0.0 566,864 + +1.9 566,865 - +1.1 566,865 - +0.0 566,865 - +0.0 566,897 - +0.2 566,993 - +1.0 566,994 + +0.0 566,994 + +1.5 566,995 - +0.0 567,093 + +1.4 567,093 + +1.5 567,094 - +1.1 567,122 - +0.0 567,215 - +0.6 567,215 - +1.4 567,403 + Rru_A0483 0.70 +0.0 567,404 - Rru_A0483 0.70 +1.6 567,404 - Rru_A0483 0.70 -1.6 567,432 + Rru_A0483 0.81 +0.0 567,438 - Rru_A0483 0.84 +1.4 567,630 + Rru_A0484 0.14 +0.0 567,631 - Rru_A0484 0.14 +2.3 567,631 - Rru_A0484 0.14 -1.0 567,957 + Rru_A0484 0.47 +1.4 568,027 - Rru_A0484 0.54 +2.7 568,154 - Rru_A0484 0.67 +0.0 568,154 - Rru_A0484 0.67 +3.6 568,156 - Rru_A0484 0.67 +0.0 568,218 + Rru_A0484 0.73 +2.9 568,309 + Rru_A0484 0.82 +0.0 568,309 + Rru_A0484 0.82 +2.5 568,310 - Rru_A0484 0.83 +2.8 568,312 - Rru_A0484 0.83 +1.5 568,414 - +0.0 568,414 - +0.0
Or see this region's nucleotide sequence