Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0467

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0466 and Rru_A0467 are separated by 121 nucleotidesRru_A0467 and Rru_A0468 are separated by 127 nucleotidesRru_A0468 and Rru_A0469 are separated by 126 nucleotides Rru_A0466: Rru_A0466 - tRNA isopentenyltransferase (NCBI), at 546,394 to 547,374 _A0466 Rru_A0467: Rru_A0467 - Acetolactate synthase, large subunit, biosynthetic type (NCBI), at 547,496 to 549,256 _A0467 Rru_A0468: Rru_A0468 - Acetolactate synthase, small subunit (NCBI), at 549,384 to 549,911 _A0468 Rru_A0469: Rru_A0469 - Ketol-acid reductoisomerase (NCBI), at 550,038 to 551,057 _A0469 Position (kb) 547 548 549 550Strain fitness (log2 ratio) -3 -2 -1 0 1at 547.601 kb on + strandat 547.682 kb on + strand, within Rru_A0467at 547.682 kb on + strand, within Rru_A0467at 547.682 kb on + strand, within Rru_A0467at 547.889 kb on + strand, within Rru_A0467at 547.889 kb on + strand, within Rru_A0467at 547.890 kb on - strand, within Rru_A0467at 547.890 kb on - strand, within Rru_A0467at 547.890 kb on - strand, within Rru_A0467at 548.015 kb on + strand, within Rru_A0467at 548.015 kb on + strand, within Rru_A0467at 548.016 kb on - strand, within Rru_A0467at 548.048 kb on + strand, within Rru_A0467at 548.048 kb on + strand, within Rru_A0467at 548.129 kb on + strand, within Rru_A0467at 548.240 kb on + strand, within Rru_A0467at 548.240 kb on + strand, within Rru_A0467at 548.241 kb on - strand, within Rru_A0467at 548.261 kb on + strand, within Rru_A0467at 548.262 kb on - strand, within Rru_A0467at 548.519 kb on + strand, within Rru_A0467at 548.519 kb on + strand, within Rru_A0467at 548.520 kb on - strand, within Rru_A0467at 548.520 kb on - strand, within Rru_A0467at 548.595 kb on - strand, within Rru_A0467at 548.615 kb on - strand, within Rru_A0467at 548.615 kb on - strand, within Rru_A0467at 548.627 kb on + strand, within Rru_A0467at 548.627 kb on + strand, within Rru_A0467at 548.627 kb on + strand, within Rru_A0467at 548.645 kb on + strand, within Rru_A0467at 548.645 kb on + strand, within Rru_A0467at 548.645 kb on + strand, within Rru_A0467at 548.717 kb on + strand, within Rru_A0467at 548.718 kb on - strand, within Rru_A0467at 548.894 kb on + strand, within Rru_A0467at 548.894 kb on + strand, within Rru_A0467at 548.895 kb on - strand, within Rru_A0467at 548.927 kb on - strand, within Rru_A0467at 548.933 kb on + strand, within Rru_A0467at 548.993 kb on + strand, within Rru_A0467at 548.994 kb on - strand, within Rru_A0467at 548.994 kb on - strand, within Rru_A0467at 548.994 kb on - strand, within Rru_A0467at 549.254 kb on + strandat 549.428 kb on + strandat 549.429 kb on - strandat 549.501 kb on + strand, within Rru_A0468at 549.503 kb on + strand, within Rru_A0468at 549.503 kb on + strand, within Rru_A0468at 549.503 kb on + strand, within Rru_A0468at 549.504 kb on - strand, within Rru_A0468at 549.909 kb on + strandat 549.910 kb on - strandat 549.910 kb on - strandat 549.918 kb on - strandat 549.960 kb on - strandat 550.048 kb on - strandat 550.048 kb on - strandat 550.107 kb on + strandat 550.136 kb on + strandat 550.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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547,601 + +0.0
547,682 + Rru_A0467 0.11 -3.2
547,682 + Rru_A0467 0.11 +0.0
547,682 + Rru_A0467 0.11 -1.8
547,889 + Rru_A0467 0.22 -2.2
547,889 + Rru_A0467 0.22 +0.0
547,890 - Rru_A0467 0.22 +0.0
547,890 - Rru_A0467 0.22 -2.0
547,890 - Rru_A0467 0.22 -1.0
548,015 + Rru_A0467 0.29 -1.4
548,015 + Rru_A0467 0.29 +0.0
548,016 - Rru_A0467 0.30 -1.7
548,048 + Rru_A0467 0.31 +0.0
548,048 + Rru_A0467 0.31 -1.5
548,129 + Rru_A0467 0.36 -1.6
548,240 + Rru_A0467 0.42 -1.0
548,240 + Rru_A0467 0.42 +0.0
548,241 - Rru_A0467 0.42 -2.2
548,261 + Rru_A0467 0.43 +0.0
548,262 - Rru_A0467 0.43 -1.8
548,519 + Rru_A0467 0.58 -1.4
548,519 + Rru_A0467 0.58 -1.5
548,520 - Rru_A0467 0.58 -1.5
548,520 - Rru_A0467 0.58 -1.6
548,595 - Rru_A0467 0.62 +0.0
548,615 - Rru_A0467 0.64 +0.0
548,615 - Rru_A0467 0.64 -1.7
548,627 + Rru_A0467 0.64 -1.3
548,627 + Rru_A0467 0.64 +0.0
548,627 + Rru_A0467 0.64 -2.0
548,645 + Rru_A0467 0.65 -1.8
548,645 + Rru_A0467 0.65 -0.2
548,645 + Rru_A0467 0.65 +0.0
548,717 + Rru_A0467 0.69 +0.0
548,718 - Rru_A0467 0.69 +0.0
548,894 + Rru_A0467 0.79 -2.0
548,894 + Rru_A0467 0.79 +0.0
548,895 - Rru_A0467 0.79 +0.0
548,927 - Rru_A0467 0.81 -1.0
548,933 + Rru_A0467 0.82 -1.9
548,993 + Rru_A0467 0.85 -1.6
548,994 - Rru_A0467 0.85 +0.0
548,994 - Rru_A0467 0.85 -2.0
548,994 - Rru_A0467 0.85 -0.3
549,254 + +0.0
549,428 + -1.5
549,429 - +0.7
549,501 + Rru_A0468 0.22 +0.0
549,503 + Rru_A0468 0.23 +0.0
549,503 + Rru_A0468 0.23 -0.6
549,503 + Rru_A0468 0.23 +0.0
549,504 - Rru_A0468 0.23 -2.9
549,909 + +0.0
549,910 - +0.0
549,910 - -1.0
549,918 - +1.0
549,960 - +0.0
550,048 - +0.0
550,048 - -0.6
550,107 + -2.7
550,136 + -0.7
550,137 - +0.0

Or see this region's nucleotide sequence