Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0444 and Rru_A0445 overlap by 4 nucleotides Rru_A0445 and Rru_A0446 are separated by 186 nucleotides Rru_A0446 and Rru_A0447 are separated by 13 nucleotides
Rru_A0444: Rru_A0444 - Sua5/YciO/YrdC/YwlC (NCBI), at 522,974 to 523,942
_A0444
Rru_A0445: Rru_A0445 - 3(2),5 -bisphosphate nucleotidase (NCBI), at 523,939 to 524,721
_A0445
Rru_A0446: Rru_A0446 - hypothetical protein (NCBI), at 524,908 to 525,354
_A0446
Rru_A0447: Rru_A0447 - AMMECR1 (NCBI), at 525,368 to 526,132
_A0447
Position (kb) 523
524
525 Strain fitness (log2 ratio) -2
-1
0
1
2 at 522.970 kb on - strand at 524.928 kb on - strand at 524.928 kb on - strand at 524.970 kb on + strand, within Rru_A0446 at 524.970 kb on + strand, within Rru_A0446 at 524.970 kb on + strand, within Rru_A0446 at 524.970 kb on + strand, within Rru_A0446 at 524.971 kb on - strand, within Rru_A0446 at 524.971 kb on - strand, within Rru_A0446 at 524.971 kb on - strand, within Rru_A0446 at 524.999 kb on + strand, within Rru_A0446 at 524.999 kb on + strand, within Rru_A0446 at 525.045 kb on - strand, within Rru_A0446 at 525.062 kb on + strand, within Rru_A0446 at 525.062 kb on + strand, within Rru_A0446 at 525.063 kb on - strand, within Rru_A0446 at 525.063 kb on - strand, within Rru_A0446 at 525.063 kb on - strand, within Rru_A0446 at 525.063 kb on - strand, within Rru_A0446 at 525.454 kb on - strand, within Rru_A0447 at 525.454 kb on - strand, within Rru_A0447 at 525.454 kb on - strand, within Rru_A0447 at 525.475 kb on + strand, within Rru_A0447 at 525.475 kb on + strand, within Rru_A0447 at 525.476 kb on - strand, within Rru_A0447 at 525.481 kb on + strand, within Rru_A0447 at 525.481 kb on + strand, within Rru_A0447 at 525.481 kb on + strand, within Rru_A0447 at 525.482 kb on - strand, within Rru_A0447 at 525.482 kb on - strand, within Rru_A0447
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 522,970 - +1.4 524,928 - +0.5 524,928 - +1.3 524,970 + Rru_A0446 0.14 +1.5 524,970 + Rru_A0446 0.14 +0.6 524,970 + Rru_A0446 0.14 +1.5 524,970 + Rru_A0446 0.14 +0.9 524,971 - Rru_A0446 0.14 +1.1 524,971 - Rru_A0446 0.14 +1.9 524,971 - Rru_A0446 0.14 +0.9 524,999 + Rru_A0446 0.20 +0.9 524,999 + Rru_A0446 0.20 +1.6 525,045 - Rru_A0446 0.31 +0.0 525,062 + Rru_A0446 0.34 +0.0 525,062 + Rru_A0446 0.34 +0.0 525,063 - Rru_A0446 0.35 +0.0 525,063 - Rru_A0446 0.35 +2.1 525,063 - Rru_A0446 0.35 +1.4 525,063 - Rru_A0446 0.35 +0.4 525,454 - Rru_A0447 0.11 +0.0 525,454 - Rru_A0447 0.11 -1.0 525,454 - Rru_A0447 0.11 -2.3 525,475 + Rru_A0447 0.14 +1.0 525,475 + Rru_A0447 0.14 +0.0 525,476 - Rru_A0447 0.14 +1.1 525,481 + Rru_A0447 0.15 +0.0 525,481 + Rru_A0447 0.15 +0.0 525,481 + Rru_A0447 0.15 +1.0 525,482 - Rru_A0447 0.15 +0.0 525,482 - Rru_A0447 0.15 +0.0
Or see this region's nucleotide sequence